RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MTRRQ9UBK8 725 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 C2CD2Q9Y426 696 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 GOLGA8SH3BPF8 625 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 DCXO43602 365 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 B3GALNT1O75752 331 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 USP17L7P0C7H9 530 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 CCDC192P0DO97 292 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 FGFR3P22607 806 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 PAPOLAP51003 745 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 GOLGA8FQ08AF8 430 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 GOLGA8DPQ0D2H9 430 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 CENPPQ6IPU0 288 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 OTOP3Q7RTS5 596 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 WDR49Q8IV35 697 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 CCDC50Q8IVM0 306 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 RNF34Q969K3 372 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 OSBPL10Q9BXB5 764 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 LMAN2LQ9H0V9 348 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 MAGEF1Q9HAY2 307 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 SPTLC3Q9NUV7 552 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 IP6K2Q9UHH9 426 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 PCDHB8Q9UN66 801 aa8.28□□□□□ -1.08
LIMCH1-219ENST00000514096 TDRD15B5MCY1 1934 aaKnown RBP8.27□□□□□ -1.08
LIMCH1-219ENST00000514096 CHD8Q9HCK8 2581 aa8.27□□□□□ -1.08
LIMCH1-219ENST00000514096 TANC1Q9C0D5 1861 aa8.27□□□□□ -1.08
LIMCH1-219ENST00000514096 PPP1R3GB7ZBB8 358 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 PIRO00625 290 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 THAP12O43422 761 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 TSPAN3O60637 253 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 PGBD3Q8N328 593 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 B3GALNT2Q8NCR0 500 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 NR1H4Q96RI1 486 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 HERC2P3Q9BVR0 1158 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 B3GNT5Q9BYG0 378 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 CISHQ9NSE2 258 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 ITGA11Q9UKX5 1188 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 SSX2IPQ9Y2D8 614 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 FNDC1Q4ZHG4 1894 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 A0A1B0GVG6 124 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 GOLGA8CPA6NN73 597 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 M0QYV0 167 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 MMEP08473 750 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 P4HA1P13674 534 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 RRM1P23921 792 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 EFEMP1Q12805 493 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 PSMD6Q15008 389 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 SMAD2Q15796 467 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 C10orf120Q5SQS8 335 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 C10orf62Q5T681 223 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 DENND5BQ6ZUT9 1274 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 EPM2AIP1Q7L775 607 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 ARHGEF19Q8IW93 802 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 DCLK2Q8N568 766 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 UROC1Q96N76 676 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 NT5C1BQ96P26 610 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 SPAG5Q96R06 1193 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 CARD6Q9BX69 1037 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 NAT10Q9H0A0 1025 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 LINC00597Q9H2U6 94 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 LRRC4Q9HBW1 653 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 KIAA1586Q9HCI6 787 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 ZFP14Q9HCL3 533 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 STIM2Q9P246 746 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 HESX1Q9UBX0 185 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 ARIH1Q9Y4X5 557 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 MYOFQ9NZM1 2061 aa8.27□□□□□ -1.09
LIMCH1-219ENST00000514096 PI15O43692 258 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 PRAMEF12O95522 483 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 MTHFRP42898 656 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 ZNF165P49910 485 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 UBXN1Q04323 297 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 LLGL1Q15334 1064 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 LEXMQ3ZCV2 418 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 ODF2Q5BJF6 829 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 PPP1R26Q5T8A7 1209 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 GAREM2Q75VX8 874 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 CACNA2D4Q7Z3S7 1137 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 GPR149Q86SP6 731 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 ADHFE1Q8IWW8 467 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 ZNF707Q96C28 371 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 RMDN2Q96LZ7 410 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 LSM14BQ9BX40 385 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 PLA2G2FQ9BZM2 168 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 TMEM30AQ9NV96 361 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 CLUHO75153 1309 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 ABCA7Q8IZY2 2146 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 BICDL2A1A5D9 508 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 TRIM24O15164 1050 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 RTN3O95197 1032 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 LAMP2P13473 410 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 HOXB8P17481 243 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 ATF6P18850 670 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 TYRO3Q06418 890 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 CTC1Q2NKJ3 1217 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 SGSM1Q2NKQ1 1148 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 NYAP1Q6ZVC0 841 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 NPAS3Q8IXF0 933 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 DEFB119Q8N690 84 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 RTP3Q9BQQ7 232 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms