RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PAFAH2Q99487 392 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 OSMRQ99650 979 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 PITPNM3Q9BZ71 974 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 SLC40A1Q9NP59 571 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 RCOR3Q9P2K3 495 aaPredicted RBP12.47□□□□□ -0.41
NUP54-202ENST00000502850 TUBGCP4Q9UGJ1 667 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 Q9Y3F1 56 aa12.47□□□□□ -0.41
NUP54-202ENST00000502850 DNM1LO00429 736 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 PIRO00625 290 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 KCNN4O15554 427 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 TAC1P20366 129 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 HNRNPH1P31943 449 aaKnown RBP12.46□□□□□ -0.41
NUP54-202ENST00000502850 SKIV2L2P42285 1042 aaKnown RBP12.46□□□□□ -0.41
NUP54-202ENST00000502850 ATP11AP98196 1134 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 PDE4CQ08493 712 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 MPP2Q14168 576 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 TAF5Q15542 800 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 XKR4Q5GH76 650 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 EFHC1Q5JVL4 640 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 FNBP1LQ5T0N5 605 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 FBXW10Q5XX13 1052 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 TRNP1Q6NT89 227 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 STRADAQ7RTN6 431 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 ZC3H18Q86VM9 953 aaKnown RBP12.46□□□□□ -0.41
NUP54-202ENST00000502850 APPL2Q8NEU8 664 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 DENND1AQ8TEH3 1009 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 FBF1Q8TES7 1133 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 ZMAT2Q96NC0 199 aaKnown RBP12.46□□□□□ -0.41
NUP54-202ENST00000502850 FERMT1Q9BQL6 677 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 SNRNP25Q9BV90 132 aaKnown RBP12.46□□□□□ -0.41
NUP54-202ENST00000502850 EIF2AQ9BY44 585 aaKnown RBP12.46□□□□□ -0.41
NUP54-202ENST00000502850 RXFP1Q9HBX9 757 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 PNPLA8Q9NP80 782 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 KLC4Q9NSK0 619 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 FAM49BQ9NUQ9 324 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 PIN4Q9Y237 131 aaKnown RBP12.46□□□□□ -0.41
NUP54-202ENST00000502850 GINS2Q9Y248 185 aa12.46□□□□□ -0.41
NUP54-202ENST00000502850 KPNA7A9QM74 516 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 HACD1B0YJ81 288 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 DYNC1LI2O43237 492 aaPredicted RBP12.45□□□□□ -0.42
NUP54-202ENST00000502850 PAPSS1O43252 624 aaPredicted RBP12.45□□□□□ -0.42
NUP54-202ENST00000502850 TYROBPO43914 113 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 HUS1O60921 280 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 ATP5HO75947 161 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 ALADP13716 330 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 ALDH3A1P30838 453 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 GNL1P36915 607 aaPredicted RBP12.45□□□□□ -0.42
NUP54-202ENST00000502850 PSEN2P49810 448 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 CRYBB1P53674 252 aaPredicted RBP12.45□□□□□ -0.42
NUP54-202ENST00000502850 MAP2K5Q13163 448 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 MMRN1Q13201 1228 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 SETDB1Q15047 1291 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 TAF1CQ15572 869 aaPredicted RBP12.45□□□□□ -0.42
NUP54-202ENST00000502850 SOWAHAQ2M3V2 549 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 LGSNQ5TDP6 509 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 TLK2Q86UE8 772 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 TOP6BLQ8N6T0 577 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 CCDC63Q8NA47 563 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 MCUQ8NE86 351 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 CENPIQ92674 756 aaPredicted RBP12.45□□□□□ -0.42
NUP54-202ENST00000502850 PAIP2Q9BPZ3 127 aaKnown RBP12.45□□□□□ -0.42
NUP54-202ENST00000502850 MLXIPLQ9NP71 852 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 PRKAG3Q9UGI9 489 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 GTF2IRD1Q9UHL9 959 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 GNEQ9Y223 722 aaKnown RBP12.45□□□□□ -0.42
NUP54-202ENST00000502850 TRIM17Q9Y577 477 aa12.45□□□□□ -0.42
NUP54-202ENST00000502850 HAS3O00219 553 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 XPO1O14980 1071 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 GRAP2O75791 330 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 DCTN3O75935 186 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 INHBAP08476 426 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 TPSB2P20231 275 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 WARSP23381 471 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 SSTR1P30872 391 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 HDAC4P56524 1084 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 WDR4P57081 412 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 SARNPP82979 210 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 ZNF200P98182 395 aaPredicted RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 SP3Q02447 781 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 SNX17Q15036 470 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 TPSAB1Q15661 275 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 ZKSCAN8Q15776 578 aaPredicted RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 SLC45A4Q5BKX6 768 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 HP1BP3Q5SSJ5 553 aaPredicted RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 MORN1Q5T089 497 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 FYB2Q5VWT5 728 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 C1orf228Q6PIY5 440 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 CAPN12Q6ZSI9 719 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 HACE1Q8IYU2 909 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 VPS52Q8N1B4 723 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 NPLOC4Q8TAT6 608 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 ZNF398Q8TD17 642 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 C11orf84Q9BUA3 381 aaPredicted RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 AP5M1Q9H0R1 490 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 NXF3Q9H4D5 531 aaKnown RBP12.44□□□□□ -0.42
NUP54-202ENST00000502850 NRDE2Q9H7Z3 1164 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 ZFYVE28Q9HCC9 887 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 RAB6BQ9NRW1 208 aa12.44□□□□□ -0.42
NUP54-202ENST00000502850 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.44□□□□□ -0.42
NUP54-202ENST00000502850 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms