RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 PPP1R2P3Q6NXS1 205 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 OLFML1Q6UWY5 402 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 OTOP3Q7RTS5 596 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 TMTC1Q8IUR5 882 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 SCML4Q8N228 414 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 ARL14EPQ8N8R7 260 aaPredicted RBP12.47□□□□□ -0.41
CUX1-210ENST00000497815 TDRD5Q8NAT2 981 aaKnown RBP12.47□□□□□ -0.41
CUX1-210ENST00000497815 ZSCAN18Q8TBC5 510 aaPredicted RBP12.47□□□□□ -0.41
CUX1-210ENST00000497815 RNF139Q8WU17 664 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 ZNF653Q96CK0 615 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 ACSF2Q96CM8 615 aaPredicted RBP12.47□□□□□ -0.41
CUX1-210ENST00000497815 PHF7Q9BWX1 381 aaPredicted RBP12.47□□□□□ -0.41
CUX1-210ENST00000497815 METTL5Q9NRN9 209 aaKnown RBP12.47□□□□□ -0.41
CUX1-210ENST00000497815 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.47□□□□□ -0.41
CUX1-210ENST00000497815 SMPD4Q9NXE4 827 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.47□□□□□ -0.414e-7■■■□□ 17.6
CUX1-210ENST00000497815 STRIP2Q9ULQ0 834 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 GREB1Q4ZG55 1949 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 XIRP2A4UGR9 3374 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 C2CD4DB7Z1M9 353 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 CAPN9O14815 690 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 COCHO43405 550 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 OAS1P00973 400 aaKnown RBP12.46□□□□□ -0.41
CUX1-210ENST00000497815 MBL2P11226 248 aaPredicted RBP12.46□□□□□ -0.41
CUX1-210ENST00000497815 NCAM1P13591 858 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 HDCP19113 662 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 DDX6P26196 483 aaKnown RBP eCLIP12.46□□□□□ -0.419e-7■■■□□ 16.7
CUX1-210ENST00000497815 CYLC1P35663 651 aaPredicted RBP12.46□□□□□ -0.41
CUX1-210ENST00000497815 AVPR1AP37288 418 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 PSEN1P49768 467 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 YWHAZP63104 245 aaKnown RBP12.46□□□□□ -0.41
CUX1-210ENST00000497815 EFEMP1Q12805 493 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 ZNF268Q14587 947 aaPredicted RBP12.46□□□□□ -0.41
CUX1-210ENST00000497815 FAM78AQ5JUQ0 283 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 EFHC1Q5JVL4 640 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 SNX30Q5VWJ9 437 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 DNAJC24Q6P3W2 148 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 RAD9BQ6WBX8 426 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 MIB1Q86YT6 1006 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 ZDHHC17Q8IUH5 632 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 TMEM139Q8IV31 216 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 CMTM8Q8IZV2 173 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 ATXN2LQ8WWM7 1075 aaKnown RBP12.46□□□□□ -0.41
CUX1-210ENST00000497815 ASB2Q96Q27 587 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 PACSIN1Q9BY11 444 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 RNF38Q9H0F5 515 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 ISCUQ9H1K1 167 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 ABCC13Q9NSE7 274 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 CLIC5Q9NZA1 410 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 GDE1Q9NZC3 331 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 MYO1AQ9UBC5 1043 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 CNOT8Q9UFF9 292 aaKnown RBP12.46□□□□□ -0.41
CUX1-210ENST00000497815 RASAL2Q9UJF2 1139 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 NAALADL1Q9UQQ1 740 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 NR2E1Q9Y466 385 aa12.46□□□□□ -0.41
CUX1-210ENST00000497815 ZNF263O14978 683 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 HSF2BPO75031 334 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 PRAMEF12O95522 483 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 FYNP06241 537 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 LAMP2P13473 410 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 FECHP22830 423 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 ATP5C1P36542 298 aaKnown RBP12.45□□□□□ -0.42
CUX1-210ENST00000497815 VIPR2P41587 438 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 TUBP50607 506 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 GALCP54803 685 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 DCAF6Q58WW2 860 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 SYPL2Q5VXT5 272 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 SLC26A9Q7LBE3 791 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 TADA2BQ86TJ2 420 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 ARID3BQ8IVW6 561 aaPredicted RBP12.45□□□□□ -0.42
CUX1-210ENST00000497815 CCDC170Q8IYT3 715 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 DEFB106AQ8N104 65 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 EMC1Q8N766 993 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 SMARCD2Q92925 531 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 KHSRPQ92945 711 aaKnown RBP eCLIP12.45□□□□□ -0.423e-7■■■■□ 19.9
CUX1-210ENST00000497815 VCPIP1Q96JH7 1222 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 SELENOOQ9BVL4 669 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 THAP2Q9H0W7 228 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 POPDC2Q9HBU9 364 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 WDR35Q9P2L0 1181 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 NENFQ9UMX5 172 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 CPQQ9Y646 472 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 NOTCH4Q99466 2003 aa12.45□□□□□ -0.42
CUX1-210ENST00000497815 DENND4AQ7Z401 1863 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 SYNJ2BP-COX16A0A087WUM0 186 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 MSI1O43347 362 aaKnown RBP12.44□□□□□ -0.42
CUX1-210ENST00000497815 DAB1O75553 588 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 NDUFA10O95299 355 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 GLI1P08151 1106 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 HMBSP08397 361 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 H2AFZP0C0S5 128 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 IRF1P10914 325 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 KRT3P12035 628 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 FLT3P36888 993 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 SPA17Q15506 151 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 PARM1Q6UWI2 310 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 H2AFVQ71UI9 128 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 LRRC8AQ8IWT6 810 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 C3orf20Q8ND61 904 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 JOSD2Q8TAC2 188 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms