RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 APOC4-APOC2K7ER74 178 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 MDM4O15151 490 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 INPPL1O15357 1258 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 APOC2P02655 101 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 PYGMP11217 842 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 FGFR1P11362 822 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 GJA8P48165 433 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 SLC7A5Q01650 507 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 MTFR1Q15390 333 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 ARHGAP15Q53QZ3 475 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 C2CD6Q53TS8 623 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 SPDYCQ5MJ68 293 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 SCUBE3Q8IX30 993 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 PALM2Q8IXS6 379 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 SLC35F5Q8WV83 523 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 ZNF512Q96ME7 567 aaPredicted RBP8.71□□□□□ -1.01
USP54-215ENST00000497106 TSNARE1Q96NA8 513 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 DDX23Q9BUQ8 820 aaKnown RBP8.71□□□□□ -1.01
USP54-215ENST00000497106 LRRC19Q9H756 370 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 TXNDC16Q9P2K2 825 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 NFU1Q9UMS0 254 aa8.71□□□□□ -1.01
USP54-215ENST00000497106 PPEF2O14830 753 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 KDELR1P24390 212 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 DHX9Q08211 1270 aaKnown RBP8.71□□□□□ -1.02
USP54-215ENST00000497106 PABPC1LQ4VXU2 614 aaKnown RBP8.71□□□□□ -1.02
USP54-215ENST00000497106 RWDD4Q6NW29 188 aaKnown RBP8.71□□□□□ -1.02
USP54-215ENST00000497106 MON1AQ86VX9 555 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 ARMC5Q96C12 935 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 C2CD4BA6NLJ0 364 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 SLC11A2P49281 568 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 VCPP55072 806 aaKnown RBP8.71□□□□□ -1.02
USP54-215ENST00000497106 YWHAGP61981 247 aaKnown RBP eCLIP8.71□□□□□ -1.02
USP54-215ENST00000497106 HTRA3P83110 453 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 CASP8Q14790 479 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 VARS2Q5ST30 1063 aaKnown RBP8.71□□□□□ -1.02
USP54-215ENST00000497106 FAM117BQ6P1L5 589 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 LRIG3Q6UXM1 1119 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 DENND5BQ6ZUT9 1274 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 TRMT10CQ7L0Y3 403 aaKnown RBP8.71□□□□□ -1.02
USP54-215ENST00000497106 C12orf50Q8NA57 414 aaPredicted RBP8.71□□□□□ -1.02
USP54-215ENST00000497106 PCED1BQ96HM7 432 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 PAWRQ96IZ0 340 aaKnown RBP8.71□□□□□ -1.02
USP54-215ENST00000497106 ZNF333Q96JL9 665 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 C8orf48Q96LL4 319 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 TWNKQ96RR1 684 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 DPEP3Q9H4B8 488 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 SALL4Q9UJQ4 1053 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 SNX24Q9Y343 169 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 FAM169AQ9Y6X4 670 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 CASP8AP2Q9UKL3 1982 aa8.71□□□□□ -1.02
USP54-215ENST00000497106 ZNF487B1APH4 448 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 F8VP50 259 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 NRP1O14786 923 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 FGF10O15520 208 aaPredicted RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 TTI1O43156 1089 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 TIMP1P01033 207 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 CALCAP01258 141 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 FDFT1P37268 417 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 HARS2P49590 506 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 SOX4Q06945 474 aaPredicted RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 C10orf120Q5SQS8 335 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 BBS12Q6ZW61 710 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 OSTM1Q86WC4 334 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 PCDH9Q9HC56 1237 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 IL23AQ9NPF7 189 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 GEMIN8Q9NWZ8 242 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 SEPT10Q9P0V9 454 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 HMGXB4Q9UGU5 601 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 TPX2Q9ULW0 747 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 HEY1Q9Y5J3 304 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 SLC4A7Q9Y6M7 1214 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 EP400Q96L91 3159 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 GABRDO14764 452 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 VPS41P49754 854 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 DRG2P55039 364 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 VSNL1P62760 191 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 BASP1P80723 227 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 IZUMO3Q5VZ72 239 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 PMF1Q6P1K2 205 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 DNAAF5Q86Y56 855 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 LRRC49Q8IUZ0 686 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 FAF2Q96CS3 445 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 SCLYQ96I15 445 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 B3GNT5Q9BYG0 378 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 ENTPD7Q9NQZ7 604 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 MCM3APO60318 1980 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 ADH1AP07327 375 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 ARSEP51690 589 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 LBX1P52954 281 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 ADCY2Q08462 1091 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 TIGD7Q6NT04 549 aaPredicted RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 ZNF598Q86UK7 904 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 TTC30AQ86WT1 665 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 SCML4Q8N228 414 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 SREK1Q8WXA9 508 aaKnown RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 CDKL2Q92772 493 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 SAMD15Q9P1V8 674 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 MAGED2Q9UNF1 606 aaPredicted RBP8.7□□□□□ -1.02
USP54-215ENST00000497106 hCG_1818297A0A087WSY0 165 aa8.7□□□□□ -1.02
USP54-215ENST00000497106 RBP3P10745 1247 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms