RNA–Protein interactions for RNA: ENST00000495327.1

RBM28-208, Transcript of RNA binding motif protein 28, human

TSL 2

Gene RBM28, Length 395 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM28-208	ENST00000495327	ERCC5	P28715	1186 aa	Predicted RBP	14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	HOXA6	P31267	233 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	PDE4C	Q08493	712 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	PM20D1	Q6GTS8	502 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	PKN3	Q6P5Z2	889 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	LCLAT1	Q6UWP7	414 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	HTR3D	Q70Z44	454 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	IRF2BP1	Q8IU81	584 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	RBBP8NL	Q8NC74	664 aa	Predicted RBP	14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	CCDC26	Q8TAB7	109 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	ATRIP	Q8WXE1	791 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	EZH1	Q92800	747 aa	Predicted RBP	14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	KREMEN1	Q96MU8	473 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	EPC1	Q9H2F5	836 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	THAP9	Q9H5L6	903 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	DNMT3L	Q9UJW3	386 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	CNTN6	Q9UQ52	1028 aa		14.02	□□□□□ -0.17
RBM28-208	ENST00000495327	SPAG17	Q6Q759	2223 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	TULP2	O00295	520 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	SCAMP3	O14828	347 aa	Known RBP	14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	HOXC11	O43248	304 aa	Predicted RBP	14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	ZBED1	O96006	694 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	IRF1	P10914	325 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	RALA	P11233	206 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	TKTL1	P51854	596 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	CT47A1	Q5JQC4	288 aa	Predicted RBP	14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	C10orf120	Q5SQS8	335 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	SMYD5	Q6GMV2	418 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	TRIM65	Q6PJ69	517 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	RHBDF2	Q6PJF5	856 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	RRAGA	Q7L523	313 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	ENOSF1	Q7L5Y1	443 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	BHLHA9	Q7RTU4	235 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	FAM114A1	Q8IWE2	563 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	BBS7	Q8IWZ6	715 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	SCML4	Q8N228	414 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	SUMF1	Q8NBK3	374 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	KCTD13	Q8WZ19	329 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	TFAP2B	Q92481	460 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	WBP2	Q969T9	261 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	ACD	Q96AP0	544 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	FAM81B	Q96LP2	452 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	C2orf42	Q9NWW7	574 aa		14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	LSM7	Q9UK45	103 aa	Known RBP	14.01	□□□□□ -0.17
RBM28-208	ENST00000495327	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	14	□□□□□ -0.17
RBM28-208	ENST00000495327	RNF225	M0QZC1	329 aa	Predicted RBP	14	□□□□□ -0.17
RBM28-208	ENST00000495327	YWHAG	P61981	247 aa	Known RBP eCLIP	14	□□□□□ -0.17
RBM28-208	ENST00000495327	GAD2	Q05329	585 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	ADIG	Q0VDE8	80 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	CNGA2	Q16280	664 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	MEA1	Q16626	185 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	TPD52L1	Q16890	204 aa	Predicted RBP	14	□□□□□ -0.17
RBM28-208	ENST00000495327	LY6G5C	Q5SRR4	150 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	GBP6	Q6ZN66	633 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327		Q6ZNB5	142 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	RBM43	Q6ZSC3	357 aa	Known RBP	14	□□□□□ -0.17
RBM28-208	ENST00000495327	ETFBKMT	Q8IXQ9	262 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	ZSWIM1	Q9BR11	485 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	ULBP1	Q9BZM6	244 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	LRRC4	Q9HBW1	653 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	SPHK2	Q9NRA0	654 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	APEX2	Q9UBZ4	518 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	PLXND1	Q9Y4D7	1925 aa		14	□□□□□ -0.17
RBM28-208	ENST00000495327	EP300	Q09472	2414 aa	Predicted RBP	13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	CCDC163	A0A0D9SF12	145 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	GOLGA6L22	H0YM25	854 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327		M0QYV0	167 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	MDM4	O15151	490 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	BRD2	P25440	801 aa	Known RBP	13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	CNR2	P34972	360 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	MTIF2	P46199	727 aa	Known RBP	13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	MAN2A1	Q16706	1144 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	EXOC3L4	Q17RC7	722 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	SYT13	Q7L8C5	426 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	WDR5B	Q86VZ2	330 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	LONP2	Q86WA8	852 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	C12orf40	Q86WS4	652 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	SIX6OS1	Q8N1H7	587 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	PHTF2	Q8N3S3	785 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	RPLP0P6	Q8NHW5	317 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	GPT2	Q8TD30	523 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	SLC35F5	Q8WV83	523 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	IPO9	Q96P70	1041 aa	Known RBP	13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	PNKP	Q96T60	521 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	CNGB3	Q9NQW8	809 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	OLA1	Q9NTK5	396 aa	Known RBP	13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	MARK1	Q9P0L2	795 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	RASAL2	Q9UJF2	1139 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	NUDT5	Q9UKK9	219 aa		13.99	□□□□□ -0.17
RBM28-208	ENST00000495327	SMG5	Q9UPR3	1016 aa	Known RBP	13.99	□□□□□ -0.17
RBM28-208	ENST00000495327		A0A0A0MRY4	1105 aa		13.98	□□□□□ -0.17
RBM28-208	ENST00000495327		K7EQS6	105 aa		13.98	□□□□□ -0.17
RBM28-208	ENST00000495327	STC2	O76061	302 aa		13.98	□□□□□ -0.17
RBM28-208	ENST00000495327	CHRM1	P11229	460 aa	Predicted RBP	13.98	□□□□□ -0.17
RBM28-208	ENST00000495327	PRKCSH	P14314	528 aa	Predicted RBP	13.98	□□□□□ -0.17
RBM28-208	ENST00000495327	MFAP3	P55082	362 aa		13.98	□□□□□ -0.17
RBM28-208	ENST00000495327	DAOA	P59103	153 aa		13.98	□□□□□ -0.17
RBM28-208	ENST00000495327	COG7	P83436	770 aa		13.98	□□□□□ -0.17
RBM28-208	ENST00000495327	DMWD	Q09019	674 aa		13.98	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms