RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 TCHHL1Q5QJ38 904 aaPredicted RBP13.96□□□□□ -0.17
GPC1-209ENST00000495100 CGB2Q6NT52 195 aa13.96□□□□□ -0.17
GPC1-209ENST00000495100 CDHR3Q6ZTQ4 885 aa13.96□□□□□ -0.17
GPC1-209ENST00000495100 SNX31Q8N9S9 440 aa13.96□□□□□ -0.17
GPC1-209ENST00000495100 REPS2Q8NFH8 660 aa13.96□□□□□ -0.17
GPC1-209ENST00000495100 SLC7A14Q8TBB6 771 aa13.96□□□□□ -0.17
GPC1-209ENST00000495100 EMID1Q96A84 441 aaPredicted RBP13.96□□□□□ -0.17
GPC1-209ENST00000495100 CDCA5Q96FF9 252 aa13.96□□□□□ -0.17
GPC1-209ENST00000495100 PEBP4Q96S96 227 aa13.96□□□□□ -0.17
GPC1-209ENST00000495100 ZCWPW1Q9H0M4 648 aa13.96□□□□□ -0.17
GPC1-209ENST00000495100 SMG5Q9UPR3 1016 aaKnown RBP13.96□□□□□ -0.17
GPC1-209ENST00000495100 CNTNAP2Q9UHC6 1331 aa13.96□□□□□ -0.18
GPC1-209ENST00000495100 H3BRB1 525 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 TP73O15350 636 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 DNAJC8O75937 253 aaPredicted RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 LMO2P25791 158 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 ARL2P36404 184 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 PREPLQ4J6C6 727 aaPredicted RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 CAPRIN2Q6IMN6 1127 aaKnown RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 TTC13Q8NBP0 860 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 E2F7Q96AV8 911 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 NXF3Q9H4D5 531 aaKnown RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 SMARCAD1Q9H4L7 1026 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 TUT1Q9H6E5 874 aaKnown RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 CAB39LQ9H9S4 337 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 PTPRHQ9HD43 1115 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 MYO7AQ13402 2215 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 C5orf60A6NFR6 353 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 ACKR2O00590 384 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 MYL3P08590 195 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 MGAT1P26572 445 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 KLRC2P26717 231 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 CXCR3P49682 368 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 SLC8A3P57103 927 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 SLC25A3Q00325 362 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 BEX3Q00994 111 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 BST1Q10588 318 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 KLF1Q13351 362 aaPredicted RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 PCSK7Q16549 785 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 NAIF1Q69YI7 327 aaPredicted RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 APOBEC3FQ8IUX4 373 aaKnown RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 KCTD17Q8N5Z5 321 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 SLC4A11Q8NBS3 891 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 CENPTQ96BT3 561 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 OPTNQ96CV9 577 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 ERAP1Q9NZ08 941 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 KCNG1Q9UIX4 513 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 RPS6KL1Q9Y6S9 549 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 MYH9P35579 1960 aaKnown RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 M0QYT0 321 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 TRPA1O75762 1119 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 HOXC6P09630 235 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 GNL1P36915 607 aaPredicted RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 ASPAP45381 313 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 BNIP1Q12981 228 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 RHBDF2Q6PJF5 856 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 XYLT1Q86Y38 959 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 ZNF669Q96BR6 464 aaPredicted RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 DENND2DQ9H6A0 471 aaPredicted RBP13.95□□□□□ -0.18
GPC1-209ENST00000495100 RSAD1Q9HA92 442 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 ETNK2Q9NVF9 386 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 RABGEF1Q9UJ41 708 aa13.95□□□□□ -0.18
GPC1-209ENST00000495100 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 AIM2O14862 343 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 MAFO75444 373 aaPredicted RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 ASMTLO95671 621 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 PAEPP09466 180 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 RFC5P40937 340 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 NDUFV1P49821 464 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 PITX1P78337 314 aaPredicted RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 KHDC1Q4VXA5 237 aaKnown RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 PLEKHG4Q58EX7 1191 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 MFSD5Q6N075 450 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 DNAJB3Q8WWF6 145 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 EIF2AQ9BY44 585 aaKnown RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 DFFAO00273 331 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 SCAMP3O14828 347 aaKnown RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 PAPSS1O43252 624 aaPredicted RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 EDF1O60869 148 aaKnown RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 CYP2B6P20813 491 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 MAP3K7CLP57077 242 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 RBP5P82980 135 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 ADIGQ0VDE8 80 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 TMEM154Q6P9G4 183 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 LAYNQ6UX15 382 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 ARFGAP1Q8N6T3 406 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 PIP4K2CQ8TBX8 421 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 PYDC1Q8WXC3 89 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 ZFP42Q96MM3 310 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 AP4E1Q9UPM8 1137 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 DNAJC16Q9Y2G8 782 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 MAFBQ9Y5Q3 323 aaPredicted RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 SIGLEC16A6NMB1 481 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 TSPAN3O60637 253 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 USP2O75604 605 aaPredicted RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 KRT38O76015 456 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 HMGB2P26583 209 aaKnown RBP13.94□□□□□ -0.18
GPC1-209ENST00000495100 RASIP1Q5U651 963 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 ARMCX2Q7L311 632 aa13.94□□□□□ -0.18
GPC1-209ENST00000495100 L3MBTL3Q96JM7 780 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms