RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, human

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCF2L-231	ENST00000494043	ZDHHC11B	P0C7U3	371 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	NCAM1	P13591	858 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	EPCAM	P16422	314 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	DES	P17661	470 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	PGF	P49763	221 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	PSEN1	P49768	467 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	TAF10	Q12962	218 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	TAF12	Q16514	161 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	DUSP6	Q16828	381 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	C15orf59	Q2T9L4	293 aa	Predicted RBP	11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	SLC25A52	Q3SY17	297 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	DCAF6	Q58WW2	860 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	PPM1L	Q5SGD2	360 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	OTUD1	Q5VV17	481 aa	Predicted RBP	11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	DAB2IP	Q5VWQ8	1189 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	SYPL2	Q5VXT5	272 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	BTBD8	Q5XKL5	378 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	RBM23	Q86U06	439 aa	Known RBP	11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	ITIH5	Q86UX2	942 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	PDZD8	Q8NEN9	1154 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	OVCA2	Q8WZ82	227 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	ZNF592	Q92610	1267 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	EDEM1	Q92611	657 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	CD101	Q93033	1021 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	NT5C3B	Q969T7	300 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	HES6	Q96HZ4	224 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	NPY6R	Q99463	290 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	TLR10	Q9BXR5	811 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	ZNF576	Q9H609	170 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	TLE6	Q9H808	572 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	TLR8	Q9NR97	1041 aa	Known RBP	11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	ABCC13	Q9NSE7	274 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	RRN3	Q9NYV6	651 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	STAP1	Q9ULZ2	295 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	PACSIN2	Q9UNF0	486 aa	Predicted RBP	11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	NAALADL1	Q9UQQ1	740 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	COLQ	Q9Y215	455 aa	Predicted RBP	11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	UST	Q9Y2C2	406 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	GREB1	Q4ZG55	1949 aa		11.92	□□□□□ -0.5
MCF2L-231	ENST00000494043	TMEM265	A0A087WTH1	108 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	MIF4GD	A9UHW6	222 aa	Known RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	RNF8	O76064	485 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	TFE3	P19532	575 aa	Predicted RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	CTNNA2	P26232	953 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	HOXA9	P31269	272 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	PCK1	P35558	622 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	NRIP1	P48552	1158 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	SULT1E1	P49888	294 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	ATP11A	P98196	1134 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	RPS6KA1	Q15418	735 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	CDO1	Q16878	200 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	SH3PXD2A	Q5TCZ1	1133 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	PAPD7	Q5XG87	772 aa	Known RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	CC2D1A	Q6P1N0	951 aa	Predicted RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	ELMSAN1	Q6PJG2	1045 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	STRADA	Q7RTN6	431 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	BNIPL	Q7Z465	357 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	ELMOD1	Q8N336	334 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	ARFGAP1	Q8N6T3	406 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	KIF18A	Q8NI77	898 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	DQX1	Q8TE96	717 aa	Known RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	FAM172A	Q8WUF8	416 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	CENPI	Q92674	756 aa	Predicted RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	PPP2R3C	Q969Q6	453 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	TBCB	Q99426	244 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	CDCA3	Q99618	268 aa	Predicted RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	NCAPG	Q9BPX3	1015 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	ADAM33	Q9BZ11	813 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	RRAGD	Q9NQL2	400 aa	Predicted RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	OSER1	Q9NX31	292 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	CLIC5	Q9NZA1	410 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	UXT	Q9UBK9	157 aa	Predicted RBP	11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	DPP7	Q9UHL4	492 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	HCFC2	Q9Y5Z7	792 aa		11.91	□□□□□ -0.5
MCF2L-231	ENST00000494043	CCDC66	A2RUB6	948 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	CCL16	O15467	120 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	DDX3Y	O15523	660 aa	Known RBP	11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	PSTPIP1	O43586	416 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	TADA3	O75528	432 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	ENDOD1	O94919	500 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	POU2F2	P09086	479 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	HNRNPA1	P09651	372 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	TCF4	P15884	667 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	MIP	P30301	263 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	CTNNA1	P35221	906 aa	Known RBP	11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	SSR1	P43307	286 aa	Known RBP	11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	MARCKSL1	P49006	195 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	DNA2	P51530	1060 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	HDAC4	P56524	1084 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	TAS2R40	P59535	323 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	PITX1	P78337	314 aa	Predicted RBP	11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	AMPD2	Q01433	879 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	SLC25A11	Q02978	314 aa	Known RBP	11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	RAB6C	Q53S08	254 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	DNTTIP2	Q5QJE6	756 aa	Known RBP	11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	LRRC38	Q5VT99	294 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	SNX30	Q5VWJ9	437 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	MSANTD2	Q6P1R3	559 aa		11.9	□□□□□ -0.5
MCF2L-231	ENST00000494043	TAC4	Q86UU9	113 aa		11.9	□□□□□ -0.5

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