RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 TNNC2P02585 160 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 ATXN1LP0C7T5 689 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 ZDHHC11BP0C7U3 371 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 NCAM1P13591 858 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 MAOBP27338 520 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 ZNF132P52740 706 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 SURF1Q15526 300 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 KIAA1324Q6UXG2 1013 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 HTR3DQ70Z44 454 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 HS2ST1Q7LGA3 356 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 GPD1LQ8N335 351 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 ZCCHC9Q8N567 271 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 PDCD7Q8N8D1 485 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 SPRYD3Q8NCJ5 442 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 LSM14AQ8ND56 463 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 OR5B17Q8NGF7 314 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 TOE1Q96GM8 510 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 KIF2CQ99661 725 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 CBWD1Q9BRT8 395 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 ZNF518BQ9C0D4 1074 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 IL21RQ9HBE5 538 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 IL37Q9NZH6 218 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 WDR35Q9P2L0 1181 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 FNDC3AQ9Y2H6 1198 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 NME7Q9Y5B8 376 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 PCDHB13Q9Y5F0 798 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 RAD54BQ9Y620 910 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 CFAP46Q8IYW2 2715 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 PTPRJQ12913 1337 aa15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 MUC22E2RYF6 1773 aaPredicted RBP15.11■□□□□ 0.01
PRPF40A-211ENST00000493468 PTPRQQ9UMZ3 2332 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 FAM92AA1XBS5 289 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 GOLGA8IPA6NC78 632 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 GOLGA8JA6NMD2 632 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 PRRT4C9JH25 899 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 BCAT2O15382 392 aaPredicted RBP15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 GCNT3O95395 438 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 PTPN1P18031 435 aaKnown RBP15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 GNL1P36915 607 aaPredicted RBP15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 ABCG1P45844 678 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 BNC1Q01954 994 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 IFRD2Q12894 506 aaPredicted RBP15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 SMAD1Q15797 465 aaKnown RBP15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 DUOXA2Q1HG44 320 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 DYMQ7RTS9 669 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 MMS19Q96T76 1030 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 MRPL45Q9BRJ2 306 aaKnown RBP15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 SLC6A17Q9H1V8 727 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 SNX25Q9H3E2 840 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 CCSER2Q9H7U1 834 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 ITM2CQ9NQX7 267 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 COMMD8Q9NX08 183 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 STK17AQ9UEE5 414 aa15.1■□□□□ 0.01
PRPF40A-211ENST00000493468 COL5A1P20908 1838 aaPredicted RBP15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 NEDD8-MDP1E9PL57 170 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 TULP1O00294 542 aaPredicted RBP15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 NPC1O15118 1278 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 ATXN7O15265 892 aaPredicted RBP15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 GREM1O60565 184 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 C1QL1O75973 258 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 IGLV3-19P01714 112 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 TYRP14679 529 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 OXTRP30559 389 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 CASP5P51878 434 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 STARD3Q14849 445 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 HLA-BQ31612 363 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 WDR49Q8IV35 697 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 SYCP3Q8IZU3 236 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 B3GALNT2Q8NCR0 500 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 C1orf216Q8TAB5 229 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 RHBDD1Q8TEB9 315 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 SLC39A7Q92504 469 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 WBP2Q969T9 261 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 DNAJC19Q96DA6 116 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 CRELD1Q96HD1 420 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 BBS2Q9BXC9 721 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 B3GNT5Q9BYG0 378 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 PCED1AQ9H1Q7 454 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 PRDM16Q9HAZ2 1276 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 ATP8B3O60423 1300 aa15.09■□□□□ 0.01
PRPF40A-211ENST00000493468 TP53BP1Q12888 1972 aaPredicted RBP15.08■□□□□ 0
PRPF40A-211ENST00000493468 METTL12A8MUP2 240 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 TNFSF14O43557 240 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 CISD3P0C7P0 127 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 DGKGP49619 791 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 SLC5A3P53794 718 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 GRIN1Q05586 938 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 ENPP2Q13822 863 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 SUZ12Q15022 739 aaKnown RBP15.08■□□□□ 0
PRPF40A-211ENST00000493468 PTPRNQ16849 979 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 FUT11Q495W5 492 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 DCAF12L1Q5VU92 463 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 OR6B3Q8NGW1 331 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 GPR174Q9BXC1 333 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 MIR1-1HGQ9H1L0 117 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 DPEP3Q9H4B8 488 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 PCIF1Q9H4Z3 704 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.08■□□□□ 09e-7■■■■■ 56.2
PRPF40A-211ENST00000493468 CHORDC1Q9UHD1 332 aaPredicted RBP15.08■□□□□ 0
PRPF40A-211ENST00000493468 TENM4Q6N022 2769 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms