RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 BTBD1Q9H0C5 482 aa5.71□□□□□ -1.5
PTPN4-212ENST00000488896 VPS16Q9H269 839 aa5.71□□□□□ -1.5
PTPN4-212ENST00000488896 PNPLA8Q9NP80 782 aa5.71□□□□□ -1.5
PTPN4-212ENST00000488896 STEAP1Q9UHE8 339 aa5.71□□□□□ -1.5
PTPN4-212ENST00000488896 SETD1BQ9UPS6 1966 aaKnown RBP5.7□□□□□ -1.5
PTPN4-212ENST00000488896 CYP2D7A0A087X1C5 515 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 KPNA5O15131 536 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 ATP5F1P24539 256 aaPredicted RBP5.7□□□□□ -1.5
PTPN4-212ENST00000488896 RBL1P28749 1068 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 MFSD13AQ14CX5 517 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 LARS2Q15031 903 aaKnown RBP5.7□□□□□ -1.5
PTPN4-212ENST00000488896 KLHDC7AQ5VTJ3 777 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 DGKHQ86XP1 1220 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 P3H2Q8IVL5 708 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 C16orf71Q8IYS4 520 aaPredicted RBP5.7□□□□□ -1.5
PTPN4-212ENST00000488896 SDR16C5Q8N3Y7 309 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 PHKBQ93100 1093 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 LRRC46Q96FV0 321 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 VPS50Q96JG6 964 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 METTL14Q9HCE5 456 aaKnown RBP5.7□□□□□ -1.5
PTPN4-212ENST00000488896 TRIM36Q9NQ86 728 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 ELOVL5Q9NYP7 299 aa5.7□□□□□ -1.5
PTPN4-212ENST00000488896 CLIC1O00299 241 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 FCHO1O14526 889 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 ADAM10O14672 748 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 BCAR3O75815 825 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 IL18RAPO95256 599 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 TOP3BO95985 862 aaKnown RBP5.69□□□□□ -1.5
PTPN4-212ENST00000488896 A1BGP04217 495 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 ANXA2P07355 339 aaKnown RBP5.69□□□□□ -1.5
PTPN4-212ENST00000488896 RPL17P18621 184 aaKnown RBP5.69□□□□□ -1.5
PTPN4-212ENST00000488896 PIK3CBP42338 1070 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 EIF4A1P60842 406 aaKnown RBP5.69□□□□□ -1.5
PTPN4-212ENST00000488896 HTRA4P83105 476 aaPredicted RBP5.69□□□□□ -1.5
PTPN4-212ENST00000488896 MZT2AQ6P582 158 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 RANBP10Q6VN20 620 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 ZNF813Q6ZN06 617 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 CCDC33Q8N5R6 958 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 TTC17Q96AE7 1141 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 IQCDQ96DY2 449 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 UNKQ9C0B0 810 aaKnown RBP5.69□□□□□ -1.5
PTPN4-212ENST00000488896 SLC25A32Q9H2D1 315 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 HEYLQ9NQ87 328 aaPredicted RBP5.69□□□□□ -1.5
PTPN4-212ENST00000488896 TRNAU1APQ9NX07 287 aaKnown RBP5.69□□□□□ -1.5
PTPN4-212ENST00000488896 VPS51Q9UID3 782 aa5.69□□□□□ -1.5
PTPN4-212ENST00000488896 PPEF2O14830 753 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 FYB1O15117 783 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 THAP12O43422 761 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 TMEM225BP0DP42 221 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 ADRA1DP25100 572 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 PTGER1P34995 402 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 TXNL4AP83876 142 aaKnown RBP5.68□□□□□ -1.5
PTPN4-212ENST00000488896 GHRHRQ02643 423 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 CFHR3Q02985 330 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 SLC14A1Q13336 389 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 DAG1Q14118 895 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 SEC23BQ15437 767 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 ST3GAL2Q16842 350 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 PXDC1Q5TGL8 231 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 VSTM1Q6UX27 236 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 LINC01465Q8N7H1 131 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 NANOGP1Q8N7R0 232 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 C12orf76Q8N812 135 aaPredicted RBP5.68□□□□□ -1.5
PTPN4-212ENST00000488896 FAM71DQ8N9W8 422 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 PNISRQ8TF01 805 aaKnown RBP5.68□□□□□ -1.5
PTPN4-212ENST00000488896 EDC3Q96F86 508 aaKnown RBP5.68□□□□□ -1.5
PTPN4-212ENST00000488896 FCRL4Q96PJ5 515 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 GJB4Q9NTQ9 266 aa5.68□□□□□ -1.5
PTPN4-212ENST00000488896 TUBA8Q9NY65 449 aaPredicted RBP5.68□□□□□ -1.5
PTPN4-212ENST00000488896 POM121BA6NF01 834 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 A8MVJ9 347 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 PRAMEF2O60811 474 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 MOSPD3O75425 235 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 ATICP31939 592 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 KRTAP10-11P60412 298 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 TRIP6Q15654 476 aaKnown RBP5.67□□□□□ -1.5
PTPN4-212ENST00000488896 C4orf46Q504U0 113 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 COBLL1Q53SF7 1204 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 TMTC4Q5T4D3 741 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 KRT78Q8N1N4 520 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 PNPLA1Q8N8W4 532 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 MAP4K1Q92918 833 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 PRR11Q96HE9 360 aaPredicted RBP5.67□□□□□ -1.5
PTPN4-212ENST00000488896 ZNF48Q96MX3 618 aaPredicted RBP5.67□□□□□ -1.5
PTPN4-212ENST00000488896 ZCWPW1Q9H0M4 648 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 CAPN11Q9UMQ6 739 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 VPS4AQ9UN37 437 aa5.67□□□□□ -1.5
PTPN4-212ENST00000488896 E5RJQ4 531 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 PARNO95453 639 aaKnown RBP5.66□□□□□ -1.5
PTPN4-212ENST00000488896 BMP15O95972 392 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 CYP19A1P11511 503 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-212ENST00000488896 ATF7P17544 494 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-212ENST00000488896 COPAP53621 1224 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 GPC5P78333 572 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 ZNF91Q05481 1191 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 ZNF543Q08ER8 600 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 MEX3CQ5U5Q3 659 aaKnown RBP5.66□□□□□ -1.5
PTPN4-212ENST00000488896 GRHL2Q6ISB3 625 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 SHC4Q6S5L8 630 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 CRTC1Q6UUV9 634 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms