RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 EZH1Q92800 747 aaPredicted RBP21.48■■□□□ 1.03
HDAC4-209ENST00000487617 KREMEN1Q96MU8 473 aa21.48■■□□□ 1.03
HDAC4-209ENST00000487617 CDK5RAP1Q96SZ6 601 aaKnown RBP21.48■■□□□ 1.03
HDAC4-209ENST00000487617 LRRC4Q9HBW1 653 aa21.48■■□□□ 1.03
HDAC4-209ENST00000487617 DACH1Q9UI36 760 aa21.48■■□□□ 1.03
HDAC4-209ENST00000487617 SLC8A2Q9UPR5 921 aa21.48■■□□□ 1.03
HDAC4-209ENST00000487617 ZBED1O96006 694 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 SETSIPP0DME0 302 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 BRD2P25440 801 aaKnown RBP21.47■■□□□ 1.03
HDAC4-209ENST00000487617 MTIF2P46199 727 aaKnown RBP21.47■■□□□ 1.03
HDAC4-209ENST00000487617 GAD2Q05329 585 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 HEATR6Q6AI08 1181 aaKnown RBP21.47■■□□□ 1.03
HDAC4-209ENST00000487617 MIB1Q86YT6 1006 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 IRF2BP1Q8IU81 584 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 ZNF276Q8N554 614 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 SUMF1Q8NBK3 374 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 RPLP0P6Q8NHW5 317 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 CRACR2AQ9BSW2 395 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 ULBP1Q9BZM6 244 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 UBE2TQ9NPD8 197 aaPredicted RBP21.47■■□□□ 1.03
HDAC4-209ENST00000487617 RASAL2Q9UJF2 1139 aa21.47■■□□□ 1.03
HDAC4-209ENST00000487617 MYO16Q9Y6X6 1858 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 GREM1O60565 184 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 CALCAP01258 141 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 SLC6A11P48066 632 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 YWHAGP61981 247 aaKnown RBP eCLIP21.46■■□□□ 1.03
HDAC4-209ENST00000487617 ADIGQ0VDE8 80 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 STILQ15468 1287 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 CNGA2Q16280 664 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 PKDCCQ504Y2 493 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 BTBD8Q5XKL5 378 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 PM20D1Q6GTS8 502 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 C12orf40Q86WS4 652 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 SIX6OS1Q8N1H7 587 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 CCDC26Q8TAB7 109 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 NDRG1Q92597 394 aaKnown RBP21.46■■□□□ 1.03
HDAC4-209ENST00000487617 IPO9Q96P70 1041 aaKnown RBP21.46■■□□□ 1.03
HDAC4-209ENST00000487617 PNKPQ96T60 521 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 HINFPQ9BQA5 517 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 EPC1Q9H2F5 836 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 THAP9Q9H5L6 903 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 SPHK2Q9NRA0 654 aa21.46■■□□□ 1.03
HDAC4-209ENST00000487617 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.46■■□□□ 1.03
HDAC4-209ENST00000487617 M0QYV0 167 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 KRT5P13647 590 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 ERCC5P28715 1186 aaPredicted RBP21.45■■□□□ 1.02
HDAC4-209ENST00000487617 HOXA6P31267 233 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 HOXC13P31276 330 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 EIF2DP41214 584 aaKnown RBP21.45■■□□□ 1.02
HDAC4-209ENST00000487617 ZNF132P52740 706 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 SEC13P55735 322 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 EFEMP1Q12805 493 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 ANO4Q32M45 955 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 GBP6Q6ZN66 633 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 RSRC2Q7L4I2 434 aaKnown RBP21.45■■□□□ 1.02
HDAC4-209ENST00000487617 LONP2Q86WA8 852 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 TMEM25Q86YD3 366 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 FAM114A1Q8IWE2 563 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 KCTD13Q8WZ19 329 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 SECISBP2LQ93073 1101 aaKnown RBP21.45■■□□□ 1.02
HDAC4-209ENST00000487617 ZSWIM1Q9BR11 485 aa21.45■■□□□ 1.02
HDAC4-209ENST00000487617 POLR3BQ9NW08 1133 aaPredicted RBP21.45■■□□□ 1.02
HDAC4-209ENST00000487617 SMG5Q9UPR3 1016 aaKnown RBP21.45■■□□□ 1.02
HDAC4-209ENST00000487617 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.44■■□□□ 1.02
HDAC4-209ENST00000487617 K7EQS6 105 aa21.44■■□□□ 1.02
HDAC4-209ENST00000487617 HOXC11O43248 304 aaPredicted RBP21.44■■□□□ 1.02
HDAC4-209ENST00000487617 APODP05090 189 aa21.44■■□□□ 1.02
HDAC4-209ENST00000487617 COG7P83436 770 aa21.44■■□□□ 1.02
HDAC4-209ENST00000487617 TRIM65Q6PJ69 517 aa21.44■■□□□ 1.02
HDAC4-209ENST00000487617 NAT16Q8N8M0 369 aa21.44■■□□□ 1.02
HDAC4-209ENST00000487617 ACDQ96AP0 544 aa21.44■■□□□ 1.02
HDAC4-209ENST00000487617 ARHGEF4Q9NR80 690 aa21.44■■□□□ 1.02
HDAC4-209ENST00000487617 STRIP2Q9ULQ0 834 aa21.44■■□□□ 1.02
HDAC4-209ENST00000487617 FANCMQ8IYD8 2048 aa21.44■■□□□ 1.02
HDAC4-209ENST00000487617 PTPRZ1P23471 2315 aaPredicted RBP21.44■■□□□ 1.02
HDAC4-209ENST00000487617 MYO15AQ9UKN7 3530 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 RIF1Q5UIP0 2472 aaKnown RBP21.43■■□□□ 1.02
HDAC4-209ENST00000487617 GOLGA6L22H0YM25 854 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 STC2O76061 302 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 KAT7O95251 611 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 HMBSP08397 361 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 LCP1P13796 627 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 SLC9A1P19634 815 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 RGS7P49802 495 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 MFAP3P55082 362 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 KDSRQ06136 332 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 MESP2Q0VG99 397 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 EXOC3L4Q17RC7 722 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 GJB7Q6PEY0 223 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 ENOSF1Q7L5Y1 443 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 BHLHA9Q7RTU4 235 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 GPT2Q8TD30 523 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 USP33Q8TEY7 942 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 SLC35F5Q8WV83 523 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 RUBCNQ92622 972 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 MARCH2Q9P0N8 246 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 CNTN6Q9UQ52 1028 aa21.43■■□□□ 1.02
HDAC4-209ENST00000487617 GRIA2P42262 883 aa21.42■■□□□ 1.02
HDAC4-209ENST00000487617 PXNP49023 591 aaPredicted RBP21.42■■□□□ 1.02
HDAC4-209ENST00000487617 DMC1Q14565 340 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms