RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 PPP1R12CQ9BZL4 782 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 MTIF3Q9H2K0 278 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 AASDHPPTQ9NRN7 309 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 MAGEC2Q9UBF1 373 aaPredicted RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 TDRKHQ9Y2W6 561 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 CCDC169A6NNP5 214 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 SORBS3O60504 671 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 CYP11A1P05108 521 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 IL4RP24394 825 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 CSE1LP55060 971 aaKnown RBP8.01□□□□□ -1.13
USP4-211ENST00000485450 MSLNQ13421 630 aaPredicted RBP8.01□□□□□ -1.13
USP4-211ENST00000485450 ASTE1Q2TB18 679 aaPredicted RBP8.01□□□□□ -1.13
USP4-211ENST00000485450 SLFN12LQ6IEE8 588 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 TMEM214Q6NUQ4 689 aaKnown RBP8.01□□□□□ -1.13
USP4-211ENST00000485450 HAUS6Q7Z4H7 955 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 RHPN2Q8IUC4 686 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 KSR1Q8IVT5 923 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 RNF149Q8NC42 400 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 TUBGCP2Q9BSJ2 902 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 CHST7Q9NS84 486 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 PRKAG2Q9UGJ0 569 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 PRELID1Q9Y255 219 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 SSX2IPQ9Y2D8 614 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 NPHP3-ACAD11A0A0J9YXS1 232 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 TRIM49BA6NDI0 452 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 RBAK-RBAKDNI3L0D1 243 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 M0QZQ0 153 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 SLC16A3O15427 465 aaKnown RBP8.01□□□□□ -1.13
USP4-211ENST00000485450 BUB1O43683 1085 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 PALMO75781 387 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 PFKPQ01813 784 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 KCNA1Q09470 495 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 TNFAIP8L3Q5GJ75 292 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 C1orf220Q5T0J3 134 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 ZBTB8OSQ8IWT0 167 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 DQX1Q8TE96 717 aaKnown RBP8.01□□□□□ -1.13
USP4-211ENST00000485450 SREK1Q8WXA9 508 aaKnown RBP8.01□□□□□ -1.13
USP4-211ENST00000485450 PGBD4Q96DM1 585 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 SMC6Q96SB8 1091 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 BLZF1Q9H2G9 400 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 EPB41L4BQ9H329 900 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 ASB7Q9H672 318 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 KIAA1586Q9HCI6 787 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.01□□□□□ -1.13
USP4-211ENST00000485450 KANSL3Q9P2N6 904 aa8.01□□□□□ -1.13
USP4-211ENST00000485450 RPN1P04843 607 aaKnown RBP8□□□□□ -1.13
USP4-211ENST00000485450 CAMK1Q14012 370 aa8□□□□□ -1.13
USP4-211ENST00000485450 CTC1Q2NKJ3 1217 aa8□□□□□ -1.13
USP4-211ENST00000485450 LIN52Q52LA3 116 aa8□□□□□ -1.13
USP4-211ENST00000485450 SLC44A4Q53GD3 710 aa8□□□□□ -1.13
USP4-211ENST00000485450 PHLDB3Q6NSJ2 640 aa8□□□□□ -1.13
USP4-211ENST00000485450 CROCCP2Q86T23 111 aa8□□□□□ -1.13
USP4-211ENST00000485450 WDR75Q8IWA0 830 aaKnown RBP8□□□□□ -1.13
USP4-211ENST00000485450 SLC39A11Q8N1S5 342 aa8□□□□□ -1.13
USP4-211ENST00000485450 BEST2Q8NFU1 509 aa8□□□□□ -1.13
USP4-211ENST00000485450 GABPB2Q8TAK5 448 aaPredicted RBP8□□□□□ -1.13
USP4-211ENST00000485450 ACTRT1Q8TDG2 376 aa8□□□□□ -1.13
USP4-211ENST00000485450 DPF3Q92784 378 aa8□□□□□ -1.13
USP4-211ENST00000485450 PKMYT1Q99640 499 aa8□□□□□ -1.13
USP4-211ENST00000485450 VN1R3Q9BXE9 311 aa8□□□□□ -1.13
USP4-211ENST00000485450 CLK4Q9HAZ1 481 aaKnown RBP8□□□□□ -1.13
USP4-211ENST00000485450 FGFR1OP2Q9NVK5 253 aa8□□□□□ -1.13
USP4-211ENST00000485450 MARCH5Q9NX47 278 aa8□□□□□ -1.13
USP4-211ENST00000485450 GDAQ9Y2T3 454 aa8□□□□□ -1.13
USP4-211ENST00000485450 PCDHB2Q9Y5E7 798 aa8□□□□□ -1.13
USP4-211ENST00000485450 DAPK3O43293 454 aa8□□□□□ -1.13
USP4-211ENST00000485450 FOXD2O60548 495 aaPredicted RBP8□□□□□ -1.13
USP4-211ENST00000485450 GLULP15104 373 aa8□□□□□ -1.13
USP4-211ENST00000485450 GTF2H1P32780 548 aa8□□□□□ -1.13
USP4-211ENST00000485450 PMS1P54277 932 aaKnown RBP8□□□□□ -1.13
USP4-211ENST00000485450 MAPK6Q16659 721 aa8□□□□□ -1.13
USP4-211ENST00000485450 ATF7IP2Q5U623 682 aa8□□□□□ -1.13
USP4-211ENST00000485450 SFR1Q86XK3 245 aa8□□□□□ -1.13
USP4-211ENST00000485450 COLGALT1Q8NBJ5 622 aa8□□□□□ -1.13
USP4-211ENST00000485450 TMC2Q8TDI7 906 aa8□□□□□ -1.13
USP4-211ENST00000485450 SCG3Q8WXD2 468 aaKnown RBP8□□□□□ -1.13
USP4-211ENST00000485450 GUCD1Q96NT3 240 aa8□□□□□ -1.13
USP4-211ENST00000485450 ACCSQ96QU6 501 aa8□□□□□ -1.13
USP4-211ENST00000485450 LBHD1Q9BQE6 289 aaPredicted RBP8□□□□□ -1.13
USP4-211ENST00000485450 CENPKQ9BS16 269 aa8□□□□□ -1.13
USP4-211ENST00000485450 EIF2AQ9BY44 585 aaKnown RBP8□□□□□ -1.13
USP4-211ENST00000485450 KMT5AQ9NQR1 393 aa8□□□□□ -1.13
USP4-211ENST00000485450 DDX43Q9NXZ2 648 aaKnown RBP8□□□□□ -1.13
USP4-211ENST00000485450 FNIP2Q9P278 1114 aa8□□□□□ -1.13
USP4-211ENST00000485450 ITGB1BP2Q9UKP3 347 aa8□□□□□ -1.13
USP4-211ENST00000485450 INTUQ9ULD6 942 aa8□□□□□ -1.13
USP4-211ENST00000485450 AKT3Q9Y243 479 aa8□□□□□ -1.13
USP4-211ENST00000485450 PIRO00625 290 aa8□□□□□ -1.13
USP4-211ENST00000485450 B4GALT5O43286 388 aa8□□□□□ -1.13
USP4-211ENST00000485450 B4GALT3O60512 393 aa8□□□□□ -1.13
USP4-211ENST00000485450 IL18RAPO95256 599 aa8□□□□□ -1.13
USP4-211ENST00000485450 CYP1A2P05177 515 aa8□□□□□ -1.13
USP4-211ENST00000485450 IFNAR2P48551 515 aa8□□□□□ -1.13
USP4-211ENST00000485450 CCL23P55773 120 aa8□□□□□ -1.13
USP4-211ENST00000485450 RNASELQ05823 741 aaKnown RBP8□□□□□ -1.13
USP4-211ENST00000485450 MGAT5Q09328 741 aa8□□□□□ -1.13
USP4-211ENST00000485450 C6orf118Q5T5N4 469 aa8□□□□□ -1.13
USP4-211ENST00000485450 C6orf183Q5T699 404 aa8□□□□□ -1.13
USP4-211ENST00000485450 VASH1Q7L8A9 365 aaPredicted RBP8□□□□□ -1.13
USP4-211ENST00000485450 DDX53Q86TM3 631 aaKnown RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms