RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 MARK1Q9P0L2 795 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 GTF3C3Q9Y5Q9 886 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 ABCA7Q8IZY2 2146 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 LAMA1P25391 3075 aa12.8□□□□□ -0.36
SQSTM1-207ENST00000481335 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 MED19A0JLT2 244 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 CHRM1P11229 460 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 ACO1P21399 889 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 ADORA2BP29275 332 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 MPLP40238 635 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 KIR2DL1P43626 348 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 SLC8A3P57103 927 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 YWHAEP62258 255 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 BYSLQ13895 437 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 AASDHQ4L235 1098 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 C2orf27AQ580R0 203 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 FOXR2Q6PJQ5 311 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 C12orf40Q86WS4 652 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 BBS7Q8IWZ6 715 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 ARHGAP18Q8N392 663 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 PHTF2Q8N3S3 785 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 TERB1Q8NA31 727 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 IL17RCQ8NAC3 791 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 WHAMMQ8TF30 809 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 KLF16Q9BXK1 252 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 DUSP15Q9H1R2 295 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 ARRDC1-AS1Q9H2J1 176 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 GDPD2Q9HCC8 539 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 WDR35Q9P2L0 1181 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 DEC1Q9P2X7 70 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 DNMT3LQ9UJW3 386 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 ZNF510Q9Y2H8 683 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 COQ4Q9Y3A0 265 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 STARD13Q9Y3M8 1113 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 USP3Q9Y6I4 520 aa12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 TPRP12270 2363 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-207ENST00000481335 TNRC6BQ9UPQ9 1833 aaKnown RBP12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 CACNG3O60359 315 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 GREM1O60565 184 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 TULP3O75386 442 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 RALAP11233 206 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 CD58P19256 250 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 DPP6P42658 865 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 PRCPP42785 496 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 PLA2G4AP47712 749 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 SEC13P55735 322 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 ORC1Q13415 861 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 PNOCQ13519 176 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 STIM1Q13586 685 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 SPDYCQ5MJ68 293 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 PPP1R26Q5T8A7 1209 aaPredicted RBP12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 PMS2CLQ68D20 193 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 ARHGAP17Q68EM7 881 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 GPRIN1Q7Z2K8 1008 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 ENGASEQ8NFI3 743 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 MDGA1Q8NFP4 955 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 OLIG1Q8TAK6 271 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 SMARCE1Q969G3 411 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 ELMO3Q96BJ8 720 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 TMEM176AQ96HP8 235 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 SPACA7Q96KW9 195 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 XPO6Q96QU8 1125 aaKnown RBP12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 MMRN2Q9H8L6 949 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 METTL14Q9HCE5 456 aaKnown RBP12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 CISHQ9NSE2 258 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 CEP192Q8TEP8 1941 aa12.78□□□□□ -0.36
SQSTM1-207ENST00000481335 PI4KAP42356 2102 aa12.77□□□□□ -0.36
SQSTM1-207ENST00000481335 TBC1D3BA6NDS4 549 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 PSMA7O14818 248 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 PMM2O15305 246 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 CYP26A1O43174 497 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 RARGP13631 454 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 TBXAS1P24557 533 aaPredicted RBP12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 HOXC13P31276 330 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 SLC6A11P48066 632 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 COG7P83436 770 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 E2F5Q15329 346 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 ANO4Q32M45 955 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 IL31Q6EBC2 164 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 ANO7Q6IWH7 933 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 SMYD4Q8IYR2 804 aaPredicted RBP12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 ALLCQ8N6M5 410 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 TXNDC5Q8NBS9 432 aaKnown RBP12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 NAGPAQ9UK23 515 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 ACACBO00763 2458 aa12.77□□□□□ -0.37
SQSTM1-207ENST00000481335 A0A1W2PQH9 124 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 BCLAF3A2AJT9 711 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 KLF8O95600 359 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 IRF1P10914 325 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 GBP1P32455 592 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 TIE1P35590 1138 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 CHKAP35790 457 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 P2RY2P41231 377 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 RAD23BP54727 409 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 KDSRQ06136 332 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 DCAF17Q5H9S7 520 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 RAB41Q5JT25 222 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 C10orf120Q5SQS8 335 aa12.76□□□□□ -0.37
SQSTM1-207ENST00000481335 TCERG1LQ5VWI1 586 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms