RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	GOLGA8DP	Q0D2H9	430 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	BST2	Q10589	180 aa	Known RBP	11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	PM20D1	Q6GTS8	502 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	LCLAT1	Q6UWP7	414 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	LONP2	Q86WA8	852 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	IRF2BP1	Q8IU81	584 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	CREBRF	Q8IUR6	639 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	ARHGEF19	Q8IW93	802 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	UBA3	Q8TBC4	463 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	TFAP2B	Q92481	460 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	RUBCN	Q92622	972 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	KAT5	Q92993	513 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	CDK5RAP1	Q96SZ6	601 aa	Known RBP	11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	PNKP	Q96T60	521 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	SPHK2	Q9NRA0	654 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	LMBRD1	Q9NUN5	540 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	NUDT5	Q9UKK9	219 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	SLC8A2	Q9UPR5	921 aa		11.76	□□□□□ -0.53
CKS1B-206	ENST00000474215	CFAP54	Q96N23	3096 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215		A0A0A0MRY4	1105 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215		K7EQS6	105 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	MDM4	O15151	490 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	HR	O43593	1189 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	SETSIP	P0DME0	302 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	CNR2	P34972	360 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	EIF2D	P41214	584 aa	Known RBP	11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	YWHAG	P61981	247 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	CNGA2	Q16280	664 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	PKDCC	Q504Y2	493 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	BTBD8	Q5XKL5	378 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	HEATR6	Q6AI08	1181 aa	Known RBP	11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	TMEM25	Q86YD3	366 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	MIB1	Q86YT6	1006 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	RBBP8NL	Q8NC74	664 aa	Predicted RBP	11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	RPLP0P6	Q8NHW5	317 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	KCTD13	Q8WZ19	329 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	CNOT6L	Q96LI5	555 aa	Known RBP	11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	KREMEN1	Q96MU8	473 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	ZSWIM1	Q9BR11	485 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	NUP62CL	Q9H1M0	184 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	LRRC4	Q9HBW1	653 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	UBE2T	Q9NPD8	197 aa	Predicted RBP	11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	LSM7	Q9UK45	103 aa	Known RBP	11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	CNTN6	Q9UQ52	1028 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	HELZ	P42694	1942 aa	Known RBP	11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	ZNF292	O60281	2723 aa		11.75	□□□□□ -0.53
CKS1B-206	ENST00000474215	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	HOXC11	O43248	304 aa	Predicted RBP	11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	KAT7	O95251	611 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	ERCC5	P28715	1186 aa	Predicted RBP	11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	HOXC13	P31276	330 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	GRIA2	P42262	883 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	ZNF132	P52740	706 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	COG7	P83436	770 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	EFEMP1	Q12805	493 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	STIL	Q15468	1287 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	TPD52L1	Q16890	204 aa	Predicted RBP	11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	ANO4	Q32M45	955 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	DPCR1	Q3MIW9	517 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	C2orf27A	Q580R0	203 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	RSRC2	Q7L4I2	434 aa	Known RBP	11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	SYT13	Q7L8C5	426 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	WDR5B	Q86VZ2	330 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	C12orf40	Q86WS4	652 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	CAMKK1	Q8N5S9	505 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	USP33	Q8TEY7	942 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	SLC35F5	Q8WV83	523 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	ACD	Q96AP0	544 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	IPO9	Q96P70	1041 aa	Known RBP	11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	CRACR2A	Q9BSW2	395 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	ULBP1	Q9BZM6	244 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	THAP9	Q9H5L6	903 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	ARHGEF4	Q9NR80	690 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	MARCH2	Q9P0N8	246 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	DACH1	Q9UI36	760 aa		11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	SMG5	Q9UPR3	1016 aa	Known RBP	11.74	□□□□□ -0.53
CKS1B-206	ENST00000474215	CCDC163	A0A0D9SF12	145 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	TULP3	O75386	442 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	STC2	O76061	302 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	CALCA	P01258	141 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	KLKB1	P03952	638 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	APOD	P05090	189 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	KRT5	P13647	590 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	SLC9A1	P19634	815 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	BRD2	P25440	801 aa	Known RBP	11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	TNFRSF4	P43489	277 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	MTIF2	P46199	727 aa	Known RBP	11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	PXN	P49023	591 aa	Predicted RBP	11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	MFAP3	P55082	362 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	SEC13	P55735	322 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	ADIG	Q0VDE8	80 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	MESP2	Q0VG99	397 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	SIM2	Q14190	667 aa	Predicted RBP	11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	DMC1	Q14565	340 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	PREPL	Q4J6C6	727 aa	Predicted RBP	11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	PMF1	Q6P1K2	205 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	TRIM65	Q6PJ69	517 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215	GBP6	Q6ZN66	633 aa		11.73	□□□□□ -0.53
CKS1B-206	ENST00000474215		Q6ZNB5	142 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms