RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 E7ENQ6 273 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 RHOXF2BP0C7M4 288 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 RARAP10276 462 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 HAPLN1P10915 354 aaPredicted RBP13.38□□□□□ -0.27
VPS13D-205ENST00000473099 RALAP11233 206 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 KDELR1P24390 212 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 IL1R2P27930 398 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 GBP1P32455 592 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 RDXP35241 583 aaKnown RBP13.38□□□□□ -0.27
VPS13D-205ENST00000473099 FNTAP49354 379 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 PSEN1P49768 467 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 ARPP19P56211 112 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 HDAC4P56524 1084 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 ROR1Q01973 937 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 TAZQ16635 292 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 ERMARDQ5T6L9 678 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 SCYL2Q6P3W7 929 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 PRSS55Q6UWB4 352 aaPredicted RBP13.38□□□□□ -0.27
VPS13D-205ENST00000473099 SND1Q7KZF4 910 aaKnown RBP eCLIP13.38□□□□□ -0.27
VPS13D-205ENST00000473099 TAS1R1Q7RTX1 841 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 BNIPLQ7Z465 357 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 MON1AQ86VX9 555 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 HERC6Q8IVU3 1022 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 TTC13Q8NBP0 860 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 KCTD6Q8NC69 237 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 B3GALT6Q96L58 329 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 KRT12Q99456 494 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 RHOXF2Q9BQY4 288 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 VN1R3Q9BXE9 311 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 AP1M1Q9BXS5 423 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 LRRC19Q9H756 370 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 IL37Q9NZH6 218 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 FNIP2Q9P278 1114 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 PCSK1NQ9UHG2 260 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 RASAL2Q9UJF2 1139 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 RAB21Q9UL25 225 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 NR2E3Q9Y5X4 410 aa13.38□□□□□ -0.27
VPS13D-205ENST00000473099 hCG_1818297A0A087WSY0 165 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 FAM92AA1XBS5 289 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 FAM187AA6NFU0 413 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 ERLIN1O75477 346 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 NCAM1P13591 858 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 TCF4P15884 667 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 ATP2A2P16615 1042 aaKnown RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 OR1D2P34982 312 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 CDKN2BP42772 138 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 ZNF135P52742 658 aaPredicted RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 LMNB2Q03252 620 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 DEUP1Q05D60 604 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 KLF1Q13351 362 aaPredicted RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 TFDP2Q14188 446 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 NAA30Q147X3 362 aaPredicted RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 BRD3Q15059 726 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 ARL13BQ3SXY8 428 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 BSPRYQ5W0U4 402 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 BTBD8Q5XKL5 378 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 AADACL2Q6P093 401 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 MFSD7Q6UXD7 560 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 RNF19BQ6ZMZ0 732 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 DENND5BQ6ZUT9 1274 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 BHLHA9Q7RTU4 235 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 TMCO2Q7Z6W1 182 aaPredicted RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 ZNF461Q8TAF7 563 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 FAM71BQ8TC56 605 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 GRK7Q8WTQ7 553 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 ANKRD7Q92527 254 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 MAGOHBQ96A72 148 aaKnown RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 NTAN1Q96AB6 310 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 RNF25Q96BH1 459 aaPredicted RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 PGLYRP2Q96PD5 576 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 ANKZF1Q9H8Y5 726 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 MRPL17Q9NRX2 175 aaKnown RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 STIM2Q9P246 746 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 RCOR3Q9P2K3 495 aaPredicted RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 PCYOX1Q9UHG3 505 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 COLQQ9Y215 455 aaPredicted RBP13.37□□□□□ -0.27
VPS13D-205ENST00000473099 LZTS1Q9Y250 596 aa13.37□□□□□ -0.27
VPS13D-205ENST00000473099 NUP205Q92621 2012 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 WDR27A2RRH5 827 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 CCDC151A5D8V7 595 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 M0QYT0 321 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 TLL1O43897 1013 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 FGF18O76093 207 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 ABLIM3O94929 683 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 YWHAQP27348 245 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 TNFRSF8P28908 595 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 CDH6P55285 790 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 YWHAGP61981 247 aaKnown RBP eCLIP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 RAB33AQ14088 237 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 KRT81Q14533 505 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 SIX1Q15475 284 aaPredicted RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 DPYSL2Q16555 572 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 CCNG2Q16589 344 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 SMTNL2Q2TAL5 461 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 MGAT5BQ3V5L5 792 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 MAP9Q49MG5 647 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 ATP13A4Q4VNC1 1196 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 TXNRD3NBQ6F5E7 133 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 RSPO2Q6UXX9 243 aaPredicted RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 CHRDL2Q6WN34 429 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms