RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RAD23BP54727 409 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 KDSRQ06136 332 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 C2orf27AQ580R0 203 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 LY6G5CQ5SRR4 150 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 IL31Q6EBC2 164 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 SYT13Q7L8C5 426 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 BBS7Q8IWZ6 715 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 TTC39CQ8N584 583 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 CAMKK1Q8N5S9 505 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 SLC4A11Q8NBS3 891 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 TMEM176AQ96HP8 235 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 FAXDC2Q96IV6 333 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 DUSP16Q9BY84 665 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 NMUR1Q9HB89 426 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 PNPLA8Q9NP80 782 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 OSER1Q9NX31 292 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 NUDT5Q9UKK9 219 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 ZFHX4Q86UP3 3567 aa16.57■□□□□ 0.24
CCDC88B-205ENST00000472524 TM4SF5O14894 197 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 DCLK1O15075 740 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 MDM4O15151 490 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 APODP05090 189 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 RARGP13631 454 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 ATP5C1P36542 298 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 LIMK1P53667 647 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 MESP2Q0VG99 397 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 LRMPQ12912 555 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 PLK5Q496M5 336 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 PLA2G2CQ5R387 149 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 SFTPA1Q8IWL2 248 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 NAT16Q8N8M0 369 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 CCDC26Q8TAB7 109 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 USP33Q8TEY7 942 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 OTUB2Q96DC9 234 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 DHTKD1Q96HY7 919 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 ZC3H10Q96K80 434 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 PNKPQ96T60 521 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 NAGPAQ9UK23 515 aa16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 TPRP12270 2363 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-205ENST00000472524 KMT2BQ9UMN6 2715 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 BIN1O00499 593 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 APBB3O95704 486 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 MPLP40238 635 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 KIF11P52732 1056 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 GAD2Q05329 585 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 GOLGA8FQ08AF8 430 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 GOLGA8DPQ0D2H9 430 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 CUL2Q13617 745 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 ANO4Q32M45 955 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 CCDC40Q4G0X9 1142 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 C10orf120Q5SQS8 335 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 TCEAL6Q6IPX3 200 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 ELOA2Q8IYF1 753 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 CCDC33Q8N5R6 958 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 TCEAL3Q969E4 200 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 SLC35C1Q96A29 364 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 KLF16Q9BXK1 252 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 CYLDQ9NQC7 956 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 ARHGEF4Q9NR80 690 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 LSM7Q9UK45 103 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 CTNND2Q9UQB3 1225 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 COQ4Q9Y3A0 265 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 CEP192Q8TEP8 1941 aa16.55■□□□□ 0.24
CCDC88B-205ENST00000472524 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 KAT7O95251 611 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 TIE1P35590 1138 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 EIF2DP41214 584 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 PPP1R2P41236 205 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 FMO5P49326 533 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 DGKEP52429 567 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 GOLGA7BQ2TAP0 167 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 STPG1Q5TH74 334 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 BTBD8Q5XKL5 378 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 ARHGAP17Q68EM7 881 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 CCDC186Q7Z3E2 898 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 SCD5Q86SK9 330 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 TTC30AQ86WT1 665 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 TMEM25Q86YD3 366 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 TSTD1Q8NFU3 115 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 NELFBQ8WX92 580 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 DDX1Q92499 740 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 CEP63Q96MT8 703 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 DUSP9Q99956 384 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 DUSP15Q9H1R2 295 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 METTL14Q9HCE5 456 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 SPHK2Q9NRA0 654 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 INVSQ9Y283 1065 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 PCDHGA5Q9Y5G8 931 aa16.54■□□□□ 0.24
CCDC88B-205ENST00000472524 HOXC11O43248 304 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 CD19P15391 556 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 BMP6P22004 513 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 STX17P56962 302 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 YWHAEP62258 255 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 ST3GAL2Q16842 350 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 N4BP2L1Q5TBK1 243 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 TTI2Q6NXR4 508 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 HTR3DQ70Z44 454 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 PIGZQ86VD9 579 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 MIB1Q86YT6 1006 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms