RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 C6orf50Q9HD87 102 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 XPNPEP1Q9NQW7 623 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 KCNK4Q9NYG8 393 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 ARHGAP26Q9UNA1 814 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 PSMD13Q9UNM6 376 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 MYRFQ9Y2G1 1151 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 ZBTB1Q9Y2K1 713 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 MYO3BQ8WXR4 1341 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 AFDNP55196 1824 aaKnown RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 SPEF2Q9C093 1822 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 CAPN14A8MX76 684 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 TAF4O00268 1085 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 PIK3CDO00329 1044 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 FOXN3O00409 490 aaPredicted RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 COPEO14579 308 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 AXIN1O15169 862 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 TIMM44O43615 452 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 CALUO43852 315 aaPredicted RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 PDE8BO95263 885 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 GCNT3O95395 438 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 TDP2O95551 362 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 TNNI2P48788 182 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 BMXP51813 675 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 NDST2P52849 883 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 SLC18A1P54219 525 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 DYNLL1P63167 89 aaKnown RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 CDKL1Q00532 357 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 BST1Q10588 318 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 APOFQ13790 326 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 FLOT2Q14254 428 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 PRKD1Q15139 912 aaPredicted RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 SIX1Q15475 284 aaPredicted RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 CHI3L2Q15782 390 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 PGS1Q32NB8 556 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 TMTC4Q5T4D3 741 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 ZNF618Q5T7W0 954 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 OGFRL1Q5TC84 451 aaPredicted RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 RWDD4Q6NW29 188 aaKnown RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 KIF6Q6ZMV9 814 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 CTAGE3PQ8IX95 158 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 ZNF786Q8N393 782 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 GOLM1Q8NBJ4 401 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 PNMA1Q8ND90 353 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 CATSPER1Q8NEC5 780 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 SLC30A5Q8TAD4 765 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 CHPT1Q8WUD6 406 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 EBF4Q9BQW3 602 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 GCOM2Q9BZD3 368 aaPredicted RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 NOL6Q9H6R4 1146 aaKnown RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 NCKIPSDQ9NZQ3 722 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 EPS15L1Q9UBC2 864 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 SEL1LQ9UBV2 794 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 DSEQ9UL01 958 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 ERVK-11Q9UQG0 969 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 APOBEC2Q9Y235 224 aaKnown RBP4.38□□□□□ -1.71
VPS50-210ENST00000471188 USTQ9Y2C2 406 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 TLL2Q9Y6L7 1015 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 HEG1Q9ULI3 1381 aa4.38□□□□□ -1.71
VPS50-210ENST00000471188 PARP4Q9UKK3 1724 aaKnown RBP4.37□□□□□ -1.71
VPS50-210ENST00000471188 ZSCAN5BA6NJL1 495 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 TNPO2O14787 897 aaKnown RBP4.37□□□□□ -1.71
VPS50-210ENST00000471188 SLC26A4O43511 780 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 TOM1L1O75674 476 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 TPPPO94811 219 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 TGDSO95455 350 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 H6PDO95479 791 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 NR3C1P04150 777 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 FYNP06241 537 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 INHBAP08476 426 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 ABHD2P08910 425 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 CD48P09326 243 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 PLA2G4BP0C869 781 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 TRIM49P0CI25 452 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 TRIM49CP0CI26 452 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 RALAP11233 206 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 P4HA1P13674 534 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 SLC5A1P13866 664 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 TCN1P20061 433 aaPredicted RBP4.37□□□□□ -1.71
VPS50-210ENST00000471188 FGFR3P22607 806 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 RPL10P27635 214 aaKnown RBP4.37□□□□□ -1.71
VPS50-210ENST00000471188 EEF1DP29692 281 aaKnown RBP4.37□□□□□ -1.71
VPS50-210ENST00000471188 MAPK4P31152 587 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 CLK3P49761 638 aaKnown RBP4.37□□□□□ -1.71
VPS50-210ENST00000471188 ARSEP51690 589 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 JAM2P57087 298 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 CABP4P57796 275 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 RPL26P61254 145 aaKnown RBP4.37□□□□□ -1.71
VPS50-210ENST00000471188 NME3Q13232 169 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 FGD3Q5JSP0 725 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 PPM1LQ5SGD2 360 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 ATG16L1Q676U5 607 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 GALNT18Q6P9A2 607 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 ZCCHC23Q6ZST2 131 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 SYDE1Q6ZW31 735 aaPredicted RBP4.37□□□□□ -1.71
VPS50-210ENST00000471188 USP43Q70EL4 1123 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 NUDCD3Q8IVD9 361 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 ZFPM1Q8IX07 1006 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 REXO1Q8N1G1 1221 aaKnown RBP4.37□□□□□ -1.71
VPS50-210ENST00000471188 MYO1HQ8N1T3 1032 aa4.37□□□□□ -1.71
VPS50-210ENST00000471188 CLIP4Q8N3C7 705 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms