RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	C1orf220	Q5T0J3	134 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	EGFLAM	Q63HQ2	1017 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	KIAA1211L	Q6NV74	962 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	HTR3D	Q70Z44	454 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	CRYBG2	Q8N1P7	616 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	IQUB	Q8NA54	791 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	SMARCD1	Q96GM5	515 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	GABRG3	Q99928	467 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	NUSAP1	Q9BXS6	441 aa	Known RBP	11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	BLZF1	Q9H2G9	400 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	CYLD	Q9NQC7	956 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	KRT82	Q9NSB4	513 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	CGN	Q9P2M7	1197 aa	Known RBP	11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	DEC1	Q9P2X7	70 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	KLK13	Q9UKR3	277 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	NEUROG3	Q9Y4Z2	214 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	CACNA1E	Q15878	2313 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	ANKRD11	Q6UB99	2663 aa	Predicted RBP	11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	SPAAR	A0A1B0GVQ0	90 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	TBC1D3B	A6NDS4	549 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	SRRM3	A6NNA2	597 aa	Predicted RBP	11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	HYAL3	O43820	417 aa	Predicted RBP	11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	TLR5	O60602	858 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	CUTA	O60888	179 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	AP1G2	O75843	785 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	TBX18	O95935	607 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	SERPINF2	P08697	491 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	CISD3	P0C7P0	127 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	CD59	P13987	128 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	CCDC130	P13994	396 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	HOXB2	P14652	356 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	NTSR1	P30989	418 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	DPP6	P42658	865 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	ASPA	P45381	313 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	AMPD3	Q01432	767 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	ORC1	Q13415	861 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	TRPC3	Q13507	836 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	CUL4B	Q13620	913 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	NCOA4	Q13772	614 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	STK38	Q15208	465 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	KNOP1	Q1ED39	458 aa	Known RBP	11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	ZNF699	Q32M78	642 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	C10orf76	Q5T2E6	689 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	SCARA5	Q6ZMJ2	495 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815		Q6ZNB5	142 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	TOGARAM2	Q6ZUX3	1019 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	ACOT1	Q86TX2	421 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	SLC9A9	Q8IVB4	645 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	KIAA0895	Q8NCT3	520 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	SLC2A14	Q8TDB8	520 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	TWNK	Q96RR1	684 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	MAGEF1	Q9HAY2	307 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	NMUR1	Q9HB89	426 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	SLC39A2	Q9NP94	309 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	BCCIP	Q9P287	314 aa	Known RBP eCLIP	11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	TFIP11	Q9UBB9	837 aa	Known RBP	11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	FBXO10	Q9UK96	956 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	SLC6A14	Q9UN76	642 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	SH3BP1	Q9Y3L3	701 aa		11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	MYO18A	Q92614	2054 aa	Known RBP	11.81	□□□□□ -0.52
PTPN7-204	ENST00000462815	PCNX2	A6NKB5	2137 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	PVALEF	A0A1B0GWK0	134 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	POLR2D	O15514	142 aa	Known RBP	11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	AP5Z1	O43299	807 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	IRF1	P10914	325 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	WAS	P42768	502 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	NDST1	P52848	882 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	RPL6	Q02878	288 aa	Known RBP	11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	ZNF33A	Q06730	810 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	STK4	Q13043	487 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	BYSL	Q13895	437 aa	Known RBP	11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	COL9A2	Q14055	689 aa	Predicted RBP	11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	DUOXA1	Q1HG43	343 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	ZACN	Q401N2	412 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	ZNF667	Q5HYK9	610 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	CLEC20A	Q6ZU45	233 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	TRMT11	Q7Z4G4	463 aa	Known RBP	11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	GRAMD1C	Q8IYS0	662 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	DEFB119	Q8N690	84 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	C12orf29	Q8N999	325 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	OR2I1P	Q8NGU4	316 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	IPO4	Q8TEX9	1081 aa	Known RBP	11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	TNIP3	Q96KP6	325 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	SLC6A17	Q9H1V8	727 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	KCTD10	Q9H3F6	313 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	DNAAF2	Q9NVR5	837 aa	Known RBP	11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	MSRB2	Q9Y3D2	182 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	ATP8B3	O60423	1300 aa		11.8	□□□□□ -0.52
PTPN7-204	ENST00000462815	IGSF10	Q6WRI0	2623 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	TAF4	O00268	1085 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	CYP26A1	O43174	497 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	MAP3K13	O43283	966 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	EXOC3	O60645	756 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	ASS1	P00966	412 aa	Known RBP	11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	TYR	P14679	529 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	AP3M2	P53677	418 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	MAP3K7CL	P57077	242 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	INCA1	Q0VD86	236 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	ENPP2	Q13822	863 aa		11.79	□□□□□ -0.52
PTPN7-204	ENST00000462815	ANO4	Q32M45	955 aa		11.79	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms