RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ZBTB34Q8NCN2 500 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ZBTB44Q8NCP5 570 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 OR52K1Q8NGK4 314 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 DCAF4Q8WV16 495 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 PIGBQ92521 554 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ISL2Q96A47 359 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 SUCLG2Q96I99 432 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 TEKT5Q96M29 485 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 KREMEN1Q96MU8 473 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 AIFM3Q96NN9 605 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 PIGSQ96S52 555 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 TCF25Q9BQ70 676 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 BCL7BQ9BQE9 202 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 YIPF3Q9GZM5 350 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 PRDM14Q9GZV8 571 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 GBA3Q9H227 469 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC39A2Q9NP94 309 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 OXSMQ9NWU1 459 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CRIM1Q9NZV1 1036 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 SUCLA2Q9P2R7 463 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 MBD2Q9UBB5 411 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CRNNQ9UBG3 495 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 STARD13Q9Y3M8 1113 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CEMIPQ8WUJ3 1361 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 AFDNP55196 1824 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 TTC41PQ6P2S7 1318 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ITIH6Q6UXX5 1313 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 PRR5-ARHGAP8B1AHC4 643 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 F8W810 466 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 H0Y8X5 98 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 FOXP2O15409 715 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 KLHL2O95198 593 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 EOMESO95936 686 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ABCB1P08183 1280 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 WEE2P0C1S8 567 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ALOX12P18054 663 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 RHCEP18577 417 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 ALDH3A1P30838 453 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 GDI1P31150 447 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 OR1G1P47890 313 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 NPTX2P47972 431 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CCR3P51677 355 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 GPR85P60893 370 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 HNRNPUQ00839 825 aaKnown RBP eCLIP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 RHDQ02161 417 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 GRSF1Q12849 480 aaKnown RBP eCLIP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CYLC2Q14093 348 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 PTK2BQ14289 1009 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CNGA2Q16280 664 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 NDUFA5Q16718 116 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 PM20D1Q6GTS8 502 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 WDR73Q6P4I2 378 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CYB5D1Q6P9G0 228 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 TMEM154Q6P9G4 183 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 RANBP10Q6VN20 620 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 MEX3BQ6ZN04 569 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 KIF18BQ86Y91 864 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 APLFQ8IW19 511 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 FAM156AQ8NDB6 213 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 UBASH3BQ8TF42 649 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 TMIGD2Q96BF3 282 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 CDCA5Q96FF9 252 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 MED30Q96HR3 178 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 VPS39Q96JC1 886 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 MDFIQ99750 246 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 PIP5K1AQ99755 562 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 NDEL1Q9GZM8 345 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 NT5C3AQ9H0P0 336 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 RAD21L1Q9H4I0 556 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 HAUS4Q9H6D7 363 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 MVB12BQ9H7P6 319 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 C12orf4Q9NQ89 552 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 WASH6PQ9NQA3 447 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 SEMA3GQ9NS98 782 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 INTS10Q9NVR2 710 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 DACT1Q9NYF0 836 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 HSPBP1Q9NZL4 362 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 TBC1D14Q9P2M4 693 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 B4GALT6Q9UBX8 382 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 FAM153AQ9UHL3 310 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 VANGL2Q9ULK5 521 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 RNF112Q9ULX5 631 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 FHOD1Q9Y613 1164 aa5.04□□□□□ -1.6
CCDC88A-209ENST00000456975 A0A087WZG4 1122 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 A0A1B0GWJ7 208 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 MAGEB16A2A368 324 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 LRRD1A4D1F6 860 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 ACOD1A6NK06 481 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 LRRIQ3A6PVS8 624 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 ARVCFO00192 962 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 PSMD9O00233 223 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 KCNK3O14649 394 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 BIRC5O15392 142 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 PFDN1O60925 122 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 GUCY1B2O75343 617 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 ULK1O75385 1050 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 CLN5O75503 358 aa5.03□□□□□ -1.6
CCDC88A-209ENST00000456975 ALBP02768 609 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms