RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 FAM228BP0C875 321 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 RARGP13631 454 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 MSNP26038 577 aaKnown RBP13.66□□□□□ -0.22
VPS33A-202ENST00000451053 DDX6P26196 483 aaKnown RBP eCLIP13.66□□□□□ -0.22
VPS33A-202ENST00000451053 PSEN1P49768 467 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 SNX16P57768 344 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 SLC18A3Q16572 532 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 ASTE1Q2TB18 679 aaPredicted RBP13.66□□□□□ -0.22
VPS33A-202ENST00000451053 FAM78AQ5JUQ0 283 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 C10orf76Q5T2E6 689 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 BSPRYQ5W0U4 402 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 OLFML1Q6UWY5 402 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 RAD9BQ6WBX8 426 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 MON1BQ7L1V2 547 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 PHLDB2Q86SQ0 1253 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 ZSCAN30Q86W11 494 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 XYLT1Q86Y38 959 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.66□□□□□ -0.22
VPS33A-202ENST00000451053 ADHFE1Q8IWW8 467 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 CMTM8Q8IZV2 173 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 PIAS4Q8N2W9 510 aaPredicted RBP13.66□□□□□ -0.22
VPS33A-202ENST00000451053 ARHGAP18Q8N392 663 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 MSANTD4Q8NCY6 345 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 ZSCAN18Q8TBC5 510 aaPredicted RBP13.66□□□□□ -0.22
VPS33A-202ENST00000451053 ACSF2Q96CM8 615 aaPredicted RBP13.66□□□□□ -0.22
VPS33A-202ENST00000451053 RNF38Q9H0F5 515 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 SMG9Q9H0W8 520 aaKnown RBP13.66□□□□□ -0.22
VPS33A-202ENST00000451053 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.66□□□□□ -0.22
VPS33A-202ENST00000451053 CLIC5Q9NZA1 410 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 ADAM22Q9P0K1 906 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 EPS15L1Q9UBC2 864 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 NUDT5Q9UKK9 219 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 NR2E1Q9Y466 385 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 DOCK8Q8NF50 2099 aa13.66□□□□□ -0.22
VPS33A-202ENST00000451053 TRAV19A0A0A6YYK7 116 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 GOLGA6L9A6NEM1 432 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 LOC730098B7Z3J9 87 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 GOLGA8SH3BPF8 625 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 MDM4O15151 490 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 SART1O43290 800 aaKnown RBP13.65□□□□□ -0.22
VPS33A-202ENST00000451053 TLR5O60602 858 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 GRAP2O75791 330 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 PRAMEF12O95522 483 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 OLFM2O95897 454 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 TBX18O95935 607 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 GZMAP12544 262 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 TUBP50607 506 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 SLC6A3Q01959 620 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 ZP2Q05996 745 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 GFPT1Q06210 699 aaPredicted RBP13.65□□□□□ -0.22
VPS33A-202ENST00000451053 HECTD3Q5T447 861 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 BTBD8Q5XKL5 378 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 MCOLN2Q8IZK6 566 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 EDEM1Q92611 657 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 FAM149B1Q96BN6 582 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 ASB16Q96NS5 453 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 PRKAG3Q9UGI9 489 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 PYCARDQ9ULZ3 195 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 NENFQ9UMX5 172 aa13.65□□□□□ -0.22
VPS33A-202ENST00000451053 ZFP37Q9Y6Q3 630 aaPredicted RBP13.65□□□□□ -0.22
VPS33A-202ENST00000451053 SOBPA7XYQ1 873 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 RTN2O75298 545 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 GJB6O95452 261 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 FTLP02792 175 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-202ENST00000451053 CALB1P05937 261 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 FYNP06241 537 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 CKMP06732 381 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 RALAP11233 206 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 HDCP19113 662 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 FCARP24071 287 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 AVPR1AP37288 418 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 VIPR2P41587 438 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 C1QBPQ07021 282 aaKnown RBP13.64□□□□□ -0.23
VPS33A-202ENST00000451053 ZNF268Q14587 947 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-202ENST00000451053 MTF1Q14872 753 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 C10orf120Q5SQS8 335 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 FAM102AQ5T9C2 384 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-202ENST00000451053 PARM1Q6UWI2 310 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 TOGARAM2Q6ZUX3 1019 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 SLC26A9Q7LBE3 791 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 ZDHHC17Q8IUH5 632 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 ARID3BQ8IVW6 561 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-202ENST00000451053 KIAA1524Q8TCG1 905 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 SMARCD2Q92925 531 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 KHSRPQ92945 711 aaKnown RBP eCLIP13.64□□□□□ -0.23
VPS33A-202ENST00000451053 USP13Q92995 863 aaPredicted RBP13.64□□□□□ -0.23
VPS33A-202ENST00000451053 RSPRY1Q96DX4 576 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 ISCUQ9H1K1 167 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 ABCC13Q9NSE7 274 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 SPTLC3Q9NUV7 552 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 ZMYM5Q9UJ78 669 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 CCL26Q9Y258 94 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 ADGRG1Q9Y653 693 aa13.64□□□□□ -0.23
VPS33A-202ENST00000451053 NUP210Q8TEM1 1887 aaPredicted RBP13.63□□□□□ -0.23
VPS33A-202ENST00000451053 ATMINO43313 823 aaPredicted RBP13.63□□□□□ -0.23
VPS33A-202ENST00000451053 MBL2P11226 248 aaPredicted RBP13.63□□□□□ -0.23
VPS33A-202ENST00000451053 PFKLP17858 780 aa13.63□□□□□ -0.23
VPS33A-202ENST00000451053 WEE1P30291 646 aa13.63□□□□□ -0.23
VPS33A-202ENST00000451053 SCNN1AP37088 669 aa13.63□□□□□ -0.23
VPS33A-202ENST00000451053 GSCP56915 257 aaPredicted RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms