RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SKAP2O75563 359 aaPredicted RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 CLK1P49759 484 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 PRKAA1Q13131 559 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 TXNRD3Q86VQ6 643 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 DPP10Q8N608 796 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 CAMKK2Q96RR4 588 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 FBXO44Q9H4M3 255 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 DPP7Q9UHL4 492 aa12.43□□□□□ -0.42
CCDC88A-207ENST00000436346 ANKRD65E5RJM6 399 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 PON1P27169 355 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 NOS3P29474 1203 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 ACTN3Q08043 901 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 CEP78Q5JTW2 689 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 DMAP1Q9NPF5 467 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 MYO5AQ9Y4I1 1855 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 RHOCP08134 193 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 ADORA2AP29274 412 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 PDK2Q15119 407 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 C4orf22Q6V702 233 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 SH2D3CQ8N5H7 860 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 KPNA6O60684 536 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 GSTA3Q16772 222 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 LLGL2Q6P1M3 1020 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 C1QTNF7Q9BXJ2 289 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 FBXO10Q9UK96 956 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 PPP2R3BQ9Y5P8 575 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 RAD51CO43502 376 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 DAB1O75553 588 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 ITGALP20701 1170 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 FAXCQ5TGI0 409 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 RMND5AQ9H871 391 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 CAB39Q9Y376 341 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 MEGF6O75095 1541 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 NR5A2O00482 541 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 TPCN2Q8NHX9 752 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 AKT1S1Q96B36 256 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 AGO4Q9HCK5 861 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 SETD4Q9NVD3 440 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 SLC12A8A0AV02 714 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 COPAP53621 1224 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 STRA8Q7Z7C7 330 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 DCDC2Q9UHG0 476 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 ZNF142P52746 1687 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 YWHAZP63104 245 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 FSCN1Q16658 493 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 ILKAPQ9H0C8 392 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 PLEKP08567 350 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 FEN1P39748 380 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 KCNT1Q5JUK3 1230 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 UBP1Q9NZI7 540 aa12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 RUVBL2Q9Y230 463 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-207ENST00000436346 NPTX2P47972 431 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 RAB27AP51159 221 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 KLHDC7AQ5VTJ3 777 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 OVOS1Q6IE37 1185 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 DOK6Q6PKX4 331 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 SPIRE2Q8WWL2 714 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 ERP27Q96DN0 273 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 MAP3K14Q99558 947 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 MTG1Q9BT17 334 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 RPRD1BQ9NQG5 326 aaKnown RBP12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 RBP3P10745 1247 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 YWHAQP27348 245 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 ACER1Q8TDN7 264 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 PPP1R14AQ96A00 147 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 RERGLQ9H628 205 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 PHF20L1A8MW92 1017 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 TRIM49D1C9J1S8 452 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 H0YC42 278 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 BMP10O95393 424 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 OR1E1P30953 314 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 RINLQ6ZS11 566 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 KLF6Q99612 283 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 GRID1Q9ULK0 1009 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 A0A1W2PQJ5 194 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 GLP2RO95838 553 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 EXOSC4Q9NPD3 245 aaKnown RBP12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 OGTO15294 1046 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 GYPCP04921 128 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 AKAP5P24588 427 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 C2CD6Q53TS8 623 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 DAB2IPQ5VWQ8 1189 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 LRIG3Q6UXM1 1119 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 KANSL3Q9P2N6 904 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 CXCL8P10145 99 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 BTG3Q14201 252 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 ATP6AP1LQ52LC2 224 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 ACAD10Q6JQN1 1059 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 DNAJB3Q8WWF6 145 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 FOXP3Q9BZS1 431 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 KLC4Q9NSK0 619 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 MSRAQ9UJ68 235 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 AP4E1Q9UPM8 1137 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 TRIM66O15016 1216 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 DEAF1O75398 565 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 ENO2P09104 434 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 GEMP55040 296 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 CYP24A1Q07973 514 aa12.41□□□□□ -0.42
CCDC88A-207ENST00000436346 PGLYRP2Q96PD5 576 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms