RNA–Protein interactions for RNA: ENST00000428626.5

SEC13-210, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 3

Gene SEC13, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-210ENST00000428626 SPHK2Q9NRA0 654 aa16.4■□□□□ 0.22
SEC13-210ENST00000428626 VPS45Q9NRW7 570 aa16.4■□□□□ 0.22
SEC13-210ENST00000428626 SH3BP1Q9Y3L3 701 aa16.4■□□□□ 0.22
SEC13-210ENST00000428626 A0A1W2PQ27 194 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 A0A1W2PQ64 194 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 A0A1W2PQD8 194 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 PATE3B3GLJ2 98 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 RHOBTB1O94844 696 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 ZNF202O95125 648 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 FAM200BP0CF97 657 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 CD58P19256 250 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 GAD2Q05329 585 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 ELF2Q15723 593 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 USP39Q53GS9 565 aaKnown RBP16.39■□□□□ 0.21
SEC13-210ENST00000428626 HTR3DQ70Z44 454 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 INTS8Q75QN2 995 aaKnown RBP16.39■□□□□ 0.21
SEC13-210ENST00000428626 SCD5Q86SK9 330 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 TTC30AQ86WT1 665 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 CCDC26Q8TAB7 109 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 NIF3L1Q9GZT8 377 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 FBXO44Q9H4M3 255 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 SCML2Q9UQR0 700 aa16.39■□□□□ 0.21
SEC13-210ENST00000428626 TNRC6BQ9UPQ9 1833 aaKnown RBP16.38■□□□□ 0.21
SEC13-210ENST00000428626 A0A1W2PQH9 124 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 CAVIN2O95810 425 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 ACO1P21399 889 aaKnown RBP16.38■□□□□ 0.21
SEC13-210ENST00000428626 TNFRSF4P43489 277 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 ADAM9Q13443 819 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 ANO4Q32M45 955 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 PPP1R26Q5T8A7 1209 aaPredicted RBP16.38■□□□□ 0.21
SEC13-210ENST00000428626 IL31Q6EBC2 164 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 ARID3AQ99856 593 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 NT5C1AQ9BXI3 368 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 CYP3A43Q9HB55 503 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 TMEM8AQ9HCN3 771 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 TLR8Q9NR97 1041 aaKnown RBP16.38■□□□□ 0.21
SEC13-210ENST00000428626 MBD1Q9UIS9 605 aaPredicted RBP16.38■□□□□ 0.21
SEC13-210ENST00000428626 PLXND1Q9Y4D7 1925 aa16.38■□□□□ 0.21
SEC13-210ENST00000428626 CEP295Q9C0D2 2601 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 LNP1A1A4G5 178 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 TBC1D3BA6NDS4 549 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 KCNA4P22459 653 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 PSMC2P35998 433 aaKnown RBP16.37■□□□□ 0.21
SEC13-210ENST00000428626 P2RY2P41231 377 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 KIF11P52732 1056 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 PNOCQ13519 176 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 MAP7D1Q3KQU3 841 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 ZNF394Q53GI3 561 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 N4BP2L1Q5TBK1 243 aaPredicted RBP16.37■□□□□ 0.21
SEC13-210ENST00000428626 TERB1Q8NA31 727 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 HMGB4Q8WW32 186 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 ACOX2Q99424 681 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 NACA2Q9H009 215 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 CD248Q9HCU0 757 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.37■□□□□ 0.21
SEC13-210ENST00000428626 DEC1Q9P2X7 70 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 USP24Q9UPU5 2620 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 PI4KAP42356 2102 aa16.37■□□□□ 0.21
SEC13-210ENST00000428626 ASCC3Q8N3C0 2202 aaKnown RBP16.36■□□□□ 0.21
SEC13-210ENST00000428626 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.36■□□□□ 0.21
SEC13-210ENST00000428626 KIF20AO95235 890 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 RARGP13631 454 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 KRT13P13646 458 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 ATP5C1P36542 298 aaKnown RBP16.36■□□□□ 0.21
SEC13-210ENST00000428626 WASP42768 502 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 ENPEPQ07075 957 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 HSF5Q4G112 596 aaPredicted RBP16.36■□□□□ 0.21
SEC13-210ENST00000428626 C10orf76Q5T2E6 689 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 RNF43Q68DV7 783 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 Q6ZNB5 142 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 TPGS1Q6ZTW0 290 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 TOGARAM2Q6ZUX3 1019 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 SLC4A11Q8NBS3 891 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 TATDN2Q93075 761 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 CCDC47Q96A33 483 aaKnown RBP16.36■□□□□ 0.21
SEC13-210ENST00000428626 ERLEC1Q96DZ1 483 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 EDEM2Q9BV94 578 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 LSM14BQ9BX40 385 aaKnown RBP16.36■□□□□ 0.21
SEC13-210ENST00000428626 IMPG2Q9BZV3 1241 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 SCAND2PQ9GZW5 306 aaPredicted RBP16.36■□□□□ 0.21
SEC13-210ENST00000428626 PCDHA5Q9Y5H7 936 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 USP3Q9Y6I4 520 aa16.36■□□□□ 0.21
SEC13-210ENST00000428626 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 TCRBV21S2A2A0A5A6 115 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 C4orf47A7E2U8 309 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 PRRT4C9JH25 899 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 NEDD8-MDP1E9PL57 170 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 CACNG3O60359 315 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 KLKB1P03952 638 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 GABRG2P18507 467 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 RPL13P26373 211 aaKnown RBP16.35■□□□□ 0.21
SEC13-210ENST00000428626 PTGER3P43115 390 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 DHPSP49366 369 aaPredicted RBP16.35■□□□□ 0.21
SEC13-210ENST00000428626 PMS1P54277 932 aaKnown RBP16.35■□□□□ 0.21
SEC13-210ENST00000428626 RAD23BP54727 409 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 EDRF1Q3B7T1 1238 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 EOGTQ5NDL2 527 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 BTBD8Q5XKL5 378 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 EGFLAMQ63HQ2 1017 aa16.35■□□□□ 0.21
SEC13-210ENST00000428626 KRT39Q6A163 491 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms