RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 LENG8Q96PV6 779 aaPredicted RBP4.85□□□□□ -1.63
USP40-204ENST00000427947 FSD1LQ9BXM9 530 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 KLK15Q9H2R5 256 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 EPS8L2Q9H6S3 715 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 CPNE5Q9HCH3 593 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 OBP2BQ9NPH6 170 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 IGSF9Q9P2J2 1179 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 SLC17A6Q9P2U8 582 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 LPAR3Q9UBY5 353 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 AMFRQ9UKV5 643 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 COL15A1P39059 1388 aa4.85□□□□□ -1.63
USP40-204ENST00000427947 M0R3H8 397 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 KIAA0355O15063 1070 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 ASNA1O43681 348 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 TJP3O95049 919 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 TMEM225BP0DP42 221 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 FPR3P25089 353 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 MCM5P33992 734 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 COL10A1Q03692 680 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 ATP1A4Q13733 1029 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 SPARCL1Q14515 664 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 PFKFB4Q16877 469 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 GRAMD1BQ3KR37 738 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 TBC1D25Q3MII6 688 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 AARS2Q5JTZ9 985 aaKnown RBP4.84□□□□□ -1.63
USP40-204ENST00000427947 FAM83BQ5T0W9 1011 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 NAPRTQ6XQN6 538 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 PTCHD4Q6ZW05 846 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 ZNF804AQ7Z570 1209 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 AMIGO2Q86SJ2 522 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 RASGRP3Q8IV61 690 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 P3H2Q8IVL5 708 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 ATG16L2Q8NAA4 619 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 TBC1D5Q92609 795 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 CTHRC1Q96CG8 243 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 VPS50Q96JG6 964 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 UROC1Q96N76 676 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 WDR24Q96S15 920 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 PSMD1Q99460 953 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 PRPF18Q99633 342 aaKnown RBP4.84□□□□□ -1.63
USP40-204ENST00000427947 MRIQ9BWK5 157 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 ALG13Q9NP73 1137 aaKnown RBP4.84□□□□□ -1.63
USP40-204ENST00000427947 CA14Q9ULX7 337 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 INSL6Q9Y581 213 aa4.84□□□□□ -1.63
USP40-204ENST00000427947 OR2W5A6NFC9 320 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 A8MVJ9 347 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 J3KTA2 159 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 NPC1O15118 1278 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 TPD52L2O43399 206 aaKnown RBP4.83□□□□□ -1.64
USP40-204ENST00000427947 TMPRSS11DO60235 418 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 TCEA3O75764 348 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 USP1O94782 785 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 TNFRSF6BO95407 300 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 GLP2RO95838 553 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 FGAP02671 866 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 HNRNPCP07910 306 aaKnown RBP eCLIP4.83□□□□□ -1.64
USP40-204ENST00000427947 DRD1P21728 446 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 ITPKBP27987 946 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 PBX1P40424 430 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 PTH2RP49190 550 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 CYP4F2P78329 520 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 PSG6Q00889 435 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 GALNT1Q10472 559 aaPredicted RBP4.83□□□□□ -1.64
USP40-204ENST00000427947 BLMHQ13867 455 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 KRT72Q14CN4 511 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 ACOX1Q15067 660 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 TUBB8Q3ZCM7 444 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 ZACNQ401N2 412 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 CCDC38Q502W7 563 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 DENND2CQ68D51 928 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 CCDC174Q6PII3 467 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 MTHFD1LQ6UB35 978 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 ARHGEF25Q86VW2 580 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 GATAD2AQ86YP4 633 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 NGDNQ8NEJ9 315 aaKnown RBP4.83□□□□□ -1.64
USP40-204ENST00000427947 FAM71BQ8TC56 605 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 STYXQ8WUJ0 223 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 MACROD1Q9BQ69 325 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 SYNPO2LQ9H987 977 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 SNX15Q9NRS6 342 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 HELLSQ9NRZ9 838 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 LRFN1Q9P244 771 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 MGAT4CQ9UBM8 478 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 ZNHIT2Q9UHR6 403 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 DTNAQ9Y4J8 743 aa4.83□□□□□ -1.64
USP40-204ENST00000427947 POLR2AP24928 1970 aaKnown RBP4.83□□□□□ -1.64
USP40-204ENST00000427947 KAT6AQ92794 2004 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 TRIM38O00635 465 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 ZNF213O14771 459 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 PCDH17O14917 1159 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 CA12O43570 354 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 EXOC3O60645 756 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 CBFA2T3O75081 653 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 CSTBP04080 98 aaKnown RBP4.82□□□□□ -1.64
USP40-204ENST00000427947 MYCLP12524 364 aaPredicted RBP4.82□□□□□ -1.64
USP40-204ENST00000427947 NPPBP16860 134 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 GPD1P21695 349 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 CHKAP35790 457 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 CLK3P49761 638 aaKnown RBP4.82□□□□□ -1.64
USP40-204ENST00000427947 DIO1P49895 249 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms