RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PLK2Q9NYY3 685 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 IL37Q9NZH6 218 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 EHD2Q9NZN4 543 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 SLC6A14Q9UN76 642 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 ZNF638Q14966 1978 aaKnown RBP8.58□□□□□ -1.04
VIM-202ENST00000421459 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 TAF4O00268 1085 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 CYP26A1O43174 497 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 HOXC11O43248 304 aaPredicted RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 SH3BP5O60239 455 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 TLR5O60602 858 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 STAU1O95793 577 aaKnown RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 FAM163BP0C2L3 166 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 CD59P13987 128 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 TYRP14679 529 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 ADORA2BP29275 332 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 NTSR1P30989 418 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 ATICP31939 592 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 ATXN3P54252 364 aaPredicted RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 GFPT1Q06210 699 aaPredicted RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 NCOA4Q13772 614 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 HSF5Q4G112 596 aaPredicted RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 PEAR1Q5VY43 1037 aaPredicted RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 GRAMD4Q6IC98 578 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 UNC13DQ70J99 1090 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 MINDY1Q8N5J2 469 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 PNPLA1Q8N8W4 532 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 TRIML1Q8N9V2 468 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 IQUBQ8NA54 791 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 PDZD8Q8NEN9 1154 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 PARD3BQ8TEW8 1205 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 IPO4Q8TEX9 1081 aaKnown RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 ZCCHC14Q8WYQ9 949 aaKnown RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 OVCA2Q8WZ82 227 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 HSPA12BQ96MM6 686 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 TWNKQ96RR1 684 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 BBS2Q9BXC9 721 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 NACA2Q9H009 215 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 SLC32A1Q9H598 525 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 CAPN10Q9HC96 672 aa8.57□□□□□ -1.04
VIM-202ENST00000421459 DMAP1Q9NPF5 467 aaPredicted RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 MORC2Q9Y6X9 1032 aaPredicted RBP8.57□□□□□ -1.04
VIM-202ENST00000421459 LOC400499M0QZD8 3231 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 A0A1W2PQH9 124 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 FAM92AA1XBS5 289 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 HHLA1C9JL84 531 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 AP5Z1O43299 807 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 KLRC4O43908 158 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 CUTAO60888 179 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 PPP6R2O75170 966 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 HMBSP08397 361 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 SERPINF2P08697 491 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 CISD3P0C7P0 127 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 AMPD3Q01432 767 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 RING1Q06587 406 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 STK4Q13043 487 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 BYSLQ13895 437 aaKnown RBP8.56□□□□□ -1.04
VIM-202ENST00000421459 KNOP1Q1ED39 458 aaKnown RBP8.56□□□□□ -1.04
VIM-202ENST00000421459 DUOXA1Q1HG43 343 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 BMT2Q1RMZ1 405 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 ZNF667Q5HYK9 610 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 C1orf220Q5T0J3 134 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 CNNM4Q6P4Q7 775 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 HTR3DQ70Z44 454 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 MARCH9Q86YJ5 346 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 CHPFQ8IZ52 775 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 KIAA1958Q8N8K9 716 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 OTUB2Q96DC9 234 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 SMARCD1Q96GM5 515 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 TNIP3Q96KP6 325 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 LRRC27Q9C0I9 530 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 ZSCAN16Q9H4T2 348 aaPredicted RBP8.56□□□□□ -1.04
VIM-202ENST00000421459 VRTNQ9H8Y1 702 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 SERTAD1Q9UHV2 236 aa8.56□□□□□ -1.04
VIM-202ENST00000421459 CNOT1A5YKK6 2376 aaKnown RBP8.56□□□□□ -1.04
VIM-202ENST00000421459 ATP8B3O60423 1300 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 THADAQ6YHU6 1953 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 CELSR3Q9NYQ7 3312 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 HELZP42694 1942 aaKnown RBP8.55□□□□□ -1.04
VIM-202ENST00000421459 DSPP15924 2871 aaKnown RBP8.55□□□□□ -1.04
VIM-202ENST00000421459 KCNJ18B7U540 433 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 ARHGAP33O14559 1287 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 CACNG3O60359 315 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 OPHN1O60890 802 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 KLKB1P03952 638 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 RARGP13631 454 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 ACO1P21399 889 aaKnown RBP8.55□□□□□ -1.04
VIM-202ENST00000421459 ATP5C1P36542 298 aaKnown RBP8.55□□□□□ -1.04
VIM-202ENST00000421459 ASPAP45381 313 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 TUBP50607 506 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 CLDN10P78369 228 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 SPDYCQ5MJ68 293 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 C19orf48Q6RUI8 117 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 KIAA1324Q6UXG2 1013 aaKnown RBP8.55□□□□□ -1.04
VIM-202ENST00000421459 SLC36A4Q6YBV0 504 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 CLEC20AQ6ZU45 233 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 TRMT11Q7Z4G4 463 aaKnown RBP8.55□□□□□ -1.04
VIM-202ENST00000421459 SCD5Q86SK9 330 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 C12orf56Q8IXR9 622 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 RGL4Q8IZJ4 473 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms