RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 MYO1CO00159 1063 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 GLP2RO95838 553 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 GNAI3P08754 354 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 EPHA8P29322 1005 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-207ENST00000419472 TM4SF1P30408 202 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 ICAM3P32942 547 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 ABCD1P33897 745 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 PAFAH1B1P43034 410 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 STAT5BP51692 787 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 GNAI1P63096 354 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 TMF1P82094 1093 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 NPY5RQ15761 445 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 AFMIDQ63HM1 303 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 LMNTD2Q8IXW0 634 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 TAGAPQ8N103 731 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 MDM1Q8TC05 714 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 IGDCC4Q8TDY8 1250 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 SDCCAG3Q96C92 435 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 RBM17Q96I25 401 aaKnown RBP5.53□□□□□ -1.52
VPS13A-207ENST00000419472 CXorf56Q9H5V9 222 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 SYNCQ9H7C4 482 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 XAB2Q9HCS7 855 aaKnown RBP5.53□□□□□ -1.52
VPS13A-207ENST00000419472 PDE7BQ9NP56 450 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 TAF5LO75529 589 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 RPP40O75818 363 aaKnown RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 DBHP09172 617 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 TPH1P17752 444 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 PSMA3P25788 255 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 GCH1P30793 250 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 NNMTP40261 264 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 EIF2DP41214 584 aaKnown RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 KCNJ4P48050 445 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 UBXN2AP68543 259 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 AP1B1Q10567 949 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 GRAMD4Q6IC98 578 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 EGFL6Q8IUX8 553 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 CCDC170Q8IYT3 715 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 OR8H3Q8N146 312 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 TBC1D5Q92609 795 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 CCDC47Q96A33 483 aaKnown RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 WDR92Q96MX6 357 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 NOX5Q96PH1 765 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 FAM83CQ9BQN1 747 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 ANKRD2Q9GZV1 360 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 TSPYL1Q9H0U9 437 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 PLEKHA2Q9HB19 425 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 C5AR2Q9P296 337 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 TBC1D14Q9P2M4 693 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 XPR1Q9UBH6 696 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 CNTN6Q9UQ52 1028 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 RCE1Q9Y256 329 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 NPIPB15A6NHN6 443 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 A8MV72 311 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 PSPNO60542 156 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 COQ9O75208 318 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 HSPA1AP0DMV8 641 aaKnown RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 HSPA1BP0DMV9 641 aaKnown RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 SLURP2P0DP57 97 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 NR2F1P10589 423 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 GARSP41250 739 aaKnown RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 KIR2DL1P43626 348 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 KIR2DL2P43627 348 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 ZNF135P52742 658 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 C1QTNF8P60827 252 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 CBX1P83916 185 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 CYP4F8P98187 520 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 PRICKLE4Q2TBC4 344 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 CR1LQ2VPA4 569 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 PLA1AQ53H76 456 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 HS1BP3Q53T59 392 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 MRNIPQ6NTE8 343 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 ZNF280BQ86YH2 543 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 ZDHHC14Q8IZN3 488 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 SCML4Q8N228 414 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 NEDD1Q8NHV4 660 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 HERC2P3Q9BVR0 1158 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 CPEB1Q9BZB8 566 aaKnown RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 C7orf69Q9H7B7 122 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 ARGLU1Q9NWB6 273 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-207ENST00000419472 GPRC5DQ9NZD1 345 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 CLCA2Q9UQC9 943 aa5.52□□□□□ -1.53
VPS13A-207ENST00000419472 KIAA0391O15091 583 aaKnown RBP5.51□□□□□ -1.53
VPS13A-207ENST00000419472 ADAM20O43506 726 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 ENO2P09104 434 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-207ENST00000419472 PEPDP12955 493 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 FSTP19883 344 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 POU6F2P78424 691 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-207ENST00000419472 CCDC173Q0VFZ6 552 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 TIGD5Q53EQ6 642 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 NAA16Q6N069 864 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-207ENST00000419472 MTFR2Q6P444 385 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 SASS6Q6UVJ0 657 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 WDTC1Q8N5D0 677 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 LIN37Q96GY3 246 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-207ENST00000419472 LBHD1Q9BQE6 289 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-207ENST00000419472 TLR8Q9NR97 1041 aaKnown RBP5.51□□□□□ -1.53
VPS13A-207ENST00000419472 DECR2Q9NUI1 292 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 USP40Q9NVE5 1235 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 DKK4Q9UBT3 224 aa5.51□□□□□ -1.53
VPS13A-207ENST00000419472 HPSEQ9Y251 543 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms