RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CHD7Q9P2D1 2997 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 C2CD4BA6NLJ0 364 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 LINC01565O15544 149 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 NOS2P35228 1153 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 MATKP42679 507 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 HADHBP55084 474 aaKnown RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 KCNC3Q14003 757 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 PABPC1LQ4VXU2 614 aaKnown RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 RSRC2Q7L4I2 434 aaKnown RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 ARCQ7LC44 396 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 HS6ST3Q8IZP7 471 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 SMG7Q92540 1137 aaKnown RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 ALS2CR12Q96Q35 445 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 GCNAQ96QF7 691 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 ZNF334Q9HCZ1 680 aaPredicted RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 LCMT1Q9UIC8 334 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 STAP1Q9ULZ2 295 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 PRRC2BQ5JSZ5 2229 aaKnown RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 RARGP13631 454 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 POU3F3P20264 500 aaPredicted RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 GABRR2P28476 465 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 PPP3CCP48454 512 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 PGFP49763 221 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 HABP4Q5JVS0 413 aaKnown RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 RARS2Q5T160 578 aaKnown RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 TMC5Q6UXY8 1006 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 DAAM2Q86T65 1068 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 CFAP57Q96MR6 1250 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 SLC2A13Q96QE2 648 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 DDX23Q9BUQ8 820 aaKnown RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 IRX2Q9BZI1 471 aaPredicted RBP18.9■□□□□ 0.62
SDC1-203ENST00000403076 HCFC1R1Q9NWW0 138 aa18.9■□□□□ 0.62
SDC1-203ENST00000403076 BUB1BO60566 1050 aaPredicted RBP18.89■□□□□ 0.61
SDC1-203ENST00000403076 PALMO75781 387 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 FYNP06241 537 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 SULT1E1P49888 294 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 ZNF143P52747 638 aaPredicted RBP18.89■□□□□ 0.61
SDC1-203ENST00000403076 ATP11AP98196 1134 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 OGDHQ02218 1023 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 ADAM15Q13444 863 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 PIGHQ14442 188 aaPredicted RBP18.89■□□□□ 0.61
SDC1-203ENST00000403076 ZNF569Q5MCW4 686 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 SYPL2Q5VXT5 272 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 TMEM184AQ6ZMB5 413 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 PDZD4Q76G19 769 aaPredicted RBP18.89■□□□□ 0.61
SDC1-203ENST00000403076 SYCE1Q8N0S2 351 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 FNIP1Q8TF40 1166 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 CNPY3Q9BT09 278 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 APOL5Q9BWW9 433 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 ATXN3LQ9H3M9 355 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 CLIC5Q9NZA1 410 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 DNMT3BQ9UBC3 853 aaKnown RBP18.89■□□□□ 0.61
SDC1-203ENST00000403076 NUDT5Q9UKK9 219 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 USTQ9Y2C2 406 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 CAPN6Q9Y6Q1 641 aa18.89■□□□□ 0.61
SDC1-203ENST00000403076 GREB1Q4ZG55 1949 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 MYO16Q9Y6X6 1858 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 ZNF840PA6NDX5 716 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 NCK2O43639 380 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 RNF8O76064 485 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 PROSCO94903 275 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 FGF19O95750 216 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 GLP2RO95838 553 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 F11P03951 625 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 ZDHHC11BP0C7U3 371 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 CDC25CP30307 473 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 SSR1P43307 286 aaKnown RBP18.88■□□□□ 0.61
SDC1-203ENST00000403076 CDO1Q16878 200 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 CCDC14Q49A88 953 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 C10orf120Q5SQS8 335 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 TRNP1Q6NT89 227 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 ANKRD54Q6NXT1 300 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 Q7L0L9 218 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 BEND5Q7L4P6 421 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 GRASPQ7Z6J2 395 aaPredicted RBP18.88■□□□□ 0.61
SDC1-203ENST00000403076 LEMD2Q8NC56 503 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 CMASQ8NFW8 434 aaPredicted RBP18.88■□□□□ 0.61
SDC1-203ENST00000403076 TRIM58Q8NG06 486 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.88■□□□□ 0.61
SDC1-203ENST00000403076 MRPS31Q92665 395 aaKnown RBP18.88■□□□□ 0.61
SDC1-203ENST00000403076 ZNF707Q96C28 371 aaPredicted RBP18.88■□□□□ 0.61
SDC1-203ENST00000403076 NACA2Q9H009 215 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 IL21Q9HBE4 155 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.88■□□□□ 0.61
SDC1-203ENST00000403076 OSER1Q9NX31 292 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 CLDND1Q9NY35 253 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 LAMA3Q16787 3333 aa18.88■□□□□ 0.61
SDC1-203ENST00000403076 ZNF638Q14966 1978 aaKnown RBP18.87■□□□□ 0.61
SDC1-203ENST00000403076 SYNJ2BP-COX16A0A087WUM0 186 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 GRID2IPA4D2P6 1211 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 ESPNB1AK53 854 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 DPYSL4O14531 572 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 RHOP08100 348 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 POU2F2P09086 479 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 PTPN9P43378 593 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 GNG11P61952 73 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 C15orf59Q2T9L4 293 aaPredicted RBP18.87■□□□□ 0.61
SDC1-203ENST00000403076 SLC25A52Q3SY17 297 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 HECTD3Q5T447 861 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 C11orf63Q6NUN7 778 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms