RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PRPF4O43172 522 aaKnown RBP eCLIP10.03□□□□□ -0.8
COL6A3-204ENST00000392003 UBOX5O94941 541 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 MYL3P08590 195 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 SDC4P31431 198 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 RGS7P49802 495 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 ATP11AP98196 1134 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 MTFR1Q15390 333 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 KIZQ2M2Z5 673 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 SPRED3Q2MJR0 410 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 IQSEC1Q6DN90 963 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 KIAA0319LQ8IZA0 1049 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 FBXO36Q8NEA4 188 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 FBF1Q8TES7 1133 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 MORF4L1Q9UBU8 362 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 SNX9Q9Y5X1 595 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 MCM3APO60318 1980 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 TSPAN1O60635 241 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 GRAP2O75791 330 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 SMNDC1O75940 238 aaKnown RBP eCLIP10.03□□□□□ -0.8
COL6A3-204ENST00000392003 SNAI1O95863 264 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-204ENST00000392003 SMPD1P17405 629 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 GDF10P55107 478 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 INCA1Q0VD86 236 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 PDK2Q15119 407 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 RASA2Q15283 850 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 TAZQ16635 292 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 DUSP28Q4G0W2 176 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 EFHC2Q5JST6 749 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 C1orf228Q6PIY5 440 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 FAM183BPQ6ZVS7 135 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 ZNF410Q86VK4 478 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 TTC30BQ8N4P2 665 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 MAB21L3Q8N8X9 362 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 NAT8LQ8N9F0 302 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 BEST2Q8NFU1 509 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 FAF2Q96CS3 445 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 TBC1D31Q96DN5 1066 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 GCOM2Q9BZD3 368 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-204ENST00000392003 EURLQ9NYK6 297 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 GGT7Q9UJ14 662 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 FARP1Q9Y4F1 1045 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-204ENST00000392003 SLC15A5A6NIM6 579 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 TNPO2O14787 897 aaKnown RBP10.03□□□□□ -0.8
COL6A3-204ENST00000392003 BANF1O75531 89 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 NPTXRO95502 500 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 STAU1O95793 577 aaKnown RBP10.03□□□□□ -0.8
COL6A3-204ENST00000392003 EZRP15311 586 aaKnown RBP10.03□□□□□ -0.8
COL6A3-204ENST00000392003 TSHRP16473 764 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 TAC1P20366 129 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 SSTR1P30872 391 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 GRM5P41594 1212 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 SLC18A1P54219 525 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 BCAR1P56945 870 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 DPYSL3Q14195 570 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 TAF5Q15542 800 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 ANKRD22Q5VYY1 191 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 TBC1D1Q86TI0 1168 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-204ENST00000392003 CYTH2Q99418 400 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 ECT2Q9H8V3 914 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 PAK5Q9P286 719 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 FETUBQ9UGM5 382 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 ZNF510Q9Y2H8 683 aa10.03□□□□□ -0.8
COL6A3-204ENST00000392003 CFAP69A5D8W1 941 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 C2CD4BA6NLJ0 364 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 AHCYL1O43865 530 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 ZBED1O96006 694 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 OAS1P00973 400 aaKnown RBP10.02□□□□□ -0.8
COL6A3-204ENST00000392003 YWHAGP61981 247 aaKnown RBP eCLIP10.02□□□□□ -0.8
COL6A3-204ENST00000392003 NOMO1Q15155 1222 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 FAM117BQ6P1L5 589 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 ACOT1Q86TX2 421 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 MFN1Q8IWA4 741 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 TMEM130Q8N3G9 435 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 OR6B3Q8NGW1 331 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 KLHL29Q96CT2 875 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 PAFAH2Q99487 392 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 CORO1BQ9BR76 489 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 NMRK2Q9NPI5 230 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.02□□□□□ -0.8
COL6A3-204ENST00000392003 SLC12A4Q9UP95 1085 aa10.02□□□□□ -0.8
COL6A3-204ENST00000392003 DICER1Q9UPY3 1922 aaKnown RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 OTOFQ9HC10 1997 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 LRRC37A2A6NM11 1700 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 APOL1O14791 398 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 HGSO14964 777 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 ZWINTO95229 277 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 MT-ND3P03897 115 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 WDR4P57081 412 aaKnown RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 SLC8A3P57103 927 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 CDC42EP1Q00587 391 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 MMRN1Q13201 1228 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 DNAJC3Q13217 504 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 C15orf59Q2T9L4 293 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 FNBP1LQ5T0N5 605 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 ZNF467Q7Z7K2 595 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 SESTD1Q86VW0 696 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 ALKBH8Q96BT7 664 aaKnown RBP10.02□□□□□ -0.81
COL6A3-204ENST00000392003 RNF157Q96PX1 679 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 ADAM33Q9BZ11 813 aa10.02□□□□□ -0.81
COL6A3-204ENST00000392003 ACSS3Q9H6R3 686 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms