RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 TRIM43BA6NCK2 446 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 PARNO95453 639 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 CHRNB3Q05901 458 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 BYSLQ13895 437 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 PTPAQ15257 358 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 PACS1Q6VY07 963 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 DENND5BQ6ZUT9 1274 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 RNF44Q7L0R7 432 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 TMC7Q7Z402 723 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 ANKRD13AQ8IZ07 590 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 HPDLQ96IR7 371 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 FANCEQ9HB96 536 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 DDIT4Q9NX09 232 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 CENPXA8MT69 81 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 UBTFL6P0CB48 400 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 BIKQ13323 160 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 SNRNP35Q16560 246 aaKnown RBP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 DOK6Q6PKX4 331 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 C3orf62Q6ZUJ4 267 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 RDM1Q8NG50 284 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 SOHLH2Q9NX45 425 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.5□□□□□ -0.73
CLIP1-202ENST00000358808 APEX2Q9UBZ4 518 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 PRR12Q9ULL5 1215 aa10.5□□□□□ -0.73
CLIP1-202ENST00000358808 HS6ST1O60243 411 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 AP1G2O75843 785 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 CHN1P15882 459 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 TFE3P19532 575 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ARF5P84085 180 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 RHAGQ02094 409 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 NFYCQ13952 458 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 CCNIQ14094 377 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ZSWIM7Q19AV6 140 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 KBTBD12Q3ZCT8 623 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 GPAT2Q6NUI2 795 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 DENND1BQ6P3S1 775 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 FAM20CQ8IXL6 584 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 TRIM51Q9BSJ1 452 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 VPS33BQ9H267 617 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 SLC9A8Q9Y2E8 581 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 MTO1Q9Y2Z2 717 aaKnown RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 B2RBV5 119 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 SNPHO15079 494 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 TEX33O43247 280 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ENTPD3O75355 529 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 AGTP01019 485 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 LBPP18428 481 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 TGM2P21980 687 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 HNMTP50135 292 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 MTM1Q13496 603 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 KRR1Q13601 381 aaKnown RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 C12orf60Q5U649 245 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 AGMOQ6ZNB7 445 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 CACUL1Q86Y37 369 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 FAM71DQ8N9W8 422 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 SLC9A7Q96T83 725 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 PRMT7Q9NVM4 692 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 AHSPQ9NZD4 102 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 PRKAG3Q9UGI9 489 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ECDO95905 644 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 CTSEP14091 401 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 GTF2H1P32780 548 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 GNA13Q14344 377 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 LPIN1Q14693 890 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ATP6AP1LQ52LC2 224 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ZNF57Q68EA5 555 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 CDC73Q6P1J9 531 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ITIH5Q86UX2 942 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 PALB2Q86YC2 1186 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 NEDD1Q8NHV4 660 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 PDLIM2Q96JY6 352 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 C9orf72Q96LT7 481 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ZBTB22O15209 634 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 MSH4O15457 936 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 VAV1P15498 845 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ITIH2P19823 946 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 SARSP49591 514 aaKnown RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 CLK2P49760 499 aaKnown RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 MRPS35P82673 323 aaKnown RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 FOXO4P98177 505 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 EFEMP1Q12805 493 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 NDUFA5Q16718 116 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 PREPLQ4J6C6 727 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 CDC42EP5Q6NZY7 148 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 FAM9CQ8IZT9 166 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 E2F7Q96AV8 911 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 TBCDQ9BTW9 1192 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 RHBGQ9H310 441 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 ELOVL6Q9H5J4 265 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 DPP3Q9NY33 737 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 RBM7Q9Y580 266 aaKnown RBP10.49□□□□□ -0.73
CLIP1-202ENST00000358808 KIF20BQ96Q89 1820 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 FLT1P17948 1338 aa10.49□□□□□ -0.73
CLIP1-202ENST00000358808 SPAG6O75602 509 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 MTA2O94776 668 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ITGB3P05106 788 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 SCNN1BP51168 640 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 KLC1Q07866 573 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 CYP20A1Q6UW02 462 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 SAMD7Q7Z3H4 446 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms