RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ISCUQ9H1K1 167 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 KCNK3O14649 394 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 CREB3O43889 395 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 TLR5O60602 858 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 LTFP02788 710 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 GZMAP12544 262 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 KCNA5P22460 613 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 TUFMP49411 452 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 MRPS5P82675 430 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 SLC6A3Q01959 620 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 STILQ15468 1287 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 CFAP221Q4G0U5 840 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 CCDC181Q5TID7 509 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 ARL14EPQ8N8R7 260 aaPredicted RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 MCRS1Q96EZ8 462 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 ALS2CR12Q96Q35 445 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 ZNF334Q9HCZ1 680 aaPredicted RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 MYO15AQ9UKN7 3530 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 USP34Q70CQ2 3546 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 GRID2IPA4D2P6 1211 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 CLASP2O75122 1294 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 LSM8O95777 96 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 ATP1A1P05023 1023 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 TMEM253P0C7T8 217 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 VCPP55072 806 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 YWHAGP61981 247 aaKnown RBP eCLIP9.63□□□□□ -0.87
USP4-202ENST00000351842 RPL10AP62906 217 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 RAB33AQ14088 237 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 ELMOD1Q8N336 334 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 DEFB123Q8N688 67 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 MS4A14Q96JA4 679 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 TBCBQ99426 244 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 PKMYT1Q99640 499 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 ADAM33Q9BZ11 813 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 RWDD3Q9Y3V2 267 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 ALG6Q9Y672 507 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 MYO10Q9HD67 2058 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 DNAH14Q0VDD8 3507 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 RNF8O76064 485 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 DAOAP59103 153 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 PKDCCQ504Y2 493 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 ZC3H12AQ5D1E8 599 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 CC2D1AQ6P1N0 951 aaPredicted RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 OLFML1Q6UWY5 402 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 LIMS2Q7Z4I7 341 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 LHX5Q9H2C1 402 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 MRPL47Q9HD33 250 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 PLK2Q9NYY3 685 aa9.63□□□□□ -0.87
USP4-202ENST00000351842 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.63□□□□□ -0.87
USP4-202ENST00000351842 XPO7Q9UIA9 1087 aaKnown RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 V9GYY5 206 aaPredicted RBP9.63□□□□□ -0.87
USP4-202ENST00000351842 SLC12A8A0AV02 714 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 LRRD1A4D1F6 860 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 TRIM66O15016 1216 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 CCP110O43303 1012 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 RARGP13631 454 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 CASQ1P31415 396 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 PLA2G4AP47712 749 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 CLCN4P51793 760 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 PTP4A2Q12974 167 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 VSTM1Q6UX27 236 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 PDZD4Q76G19 769 aaPredicted RBP9.62□□□□□ -0.87
USP4-202ENST00000351842 PHF13Q86YI8 300 aaPredicted RBP9.62□□□□□ -0.87
USP4-202ENST00000351842 PYROXD2Q8N2H3 581 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 TPCN2Q8NHX9 752 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 DHX35Q9H5Z1 703 aaKnown RBP9.62□□□□□ -0.87
USP4-202ENST00000351842 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.62□□□□□ -0.87
USP4-202ENST00000351842 STRIP2Q9ULQ0 834 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 BACE2Q9Y5Z0 518 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 MYOFQ9NZM1 2061 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 MBL2P11226 248 aaPredicted RBP9.62□□□□□ -0.87
USP4-202ENST00000351842 WEE1P30291 646 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 TAS2R40P59535 323 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 MCCD1P59942 119 aaPredicted RBP9.62□□□□□ -0.87
USP4-202ENST00000351842 C1QBPQ07021 282 aaKnown RBP9.62□□□□□ -0.87
USP4-202ENST00000351842 ZNF354CQ86Y25 554 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 C3orf20Q8ND61 904 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 VN1R2Q8NFZ6 395 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 CASP10Q92851 521 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 PLVAPQ9BX97 442 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 SLC4A5Q9BY07 1137 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 ASAH2Q9NR71 780 aa9.62□□□□□ -0.87
USP4-202ENST00000351842 MRPS23Q9Y3D9 190 aaKnown RBP9.62□□□□□ -0.87
USP4-202ENST00000351842 HHLA1C9JL84 531 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 CEP104O60308 925 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 TBC1D4O60343 1298 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 RB1P06400 928 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 GPD1P21695 349 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 CCR2P41597 374 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 KCNQ1P51787 676 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 DEUP1Q05D60 604 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 RWDD4Q6NW29 188 aaKnown RBP9.61□□□□□ -0.87
USP4-202ENST00000351842 NYAP1Q6ZVC0 841 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 TMEM110Q86TL2 294 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 RNF168Q8IYW5 571 aaPredicted RBP9.61□□□□□ -0.87
USP4-202ENST00000351842 PPP2R3CQ969Q6 453 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 GAS2L1Q99501 681 aaPredicted RBP9.61□□□□□ -0.87
USP4-202ENST00000351842 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.61□□□□□ -0.87
USP4-202ENST00000351842 TRPM5Q9NZQ8 1165 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 CALCOCO1Q9P1Z2 691 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms