RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 ARHGAP8P85298 464 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 DYNC1I2Q13409 638 aaKnown RBP12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 KIZQ2M2Z5 673 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 ARL13BQ3SXY8 428 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 KCNT2Q6UVM3 1135 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 FBXO16Q8IX29 292 aaPredicted RBP12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 TNS4Q8IZW8 715 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 IPMKQ8NFU5 416 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 GGA3Q9NZ52 723 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 AKAP10O43572 662 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 C6orf222P0C671 652 aaPredicted RBP12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 CYP2F1P24903 491 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 MGAT1P26572 445 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 NSUN2Q08J23 767 aaKnown RBP eCLIP12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 RIPK1Q13546 671 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 RIPOR1Q6ZS17 1223 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 VPS39Q96JC1 886 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 RNPEPQ9H4A4 650 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 TJP2Q9UDY2 1190 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 SOX13Q9UN79 622 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 PIN4Q9Y237 131 aaKnown RBP12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 KIF1AQ12756 1690 aa12.85□□□□□ -0.35
SNRNP48-201ENST00000342415 TMEM191CA6NGB0 347 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 M0QYT0 321 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 GNGT2O14610 69 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 GSC2O15499 205 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 B4GALT5O43286 388 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 XPOTO43592 962 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 MICAL2O94851 1124 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 CSPG5O95196 566 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ERVK-10P10266 1014 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 SPRP35270 261 aaPredicted RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PTGER2P43116 358 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 TBL3Q12788 808 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PEX6Q13608 980 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 TTLL4Q14679 1199 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 STRA8Q7Z7C7 330 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 DDIASQ8IXT1 998 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 EXOC8Q8IYI6 725 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 STKLD1Q8NE28 680 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 TFB1MQ8WVM0 346 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 CCDC138Q96M89 665 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 GCOM2Q9BZD3 368 aaPredicted RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ACSS3Q9H6R3 686 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 APOBEC3GQ9HC16 384 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 CLIC5Q9NZA1 410 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 WARS2Q9UGM6 360 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PLA2G4CQ9UP65 541 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 WASF2Q9Y6W5 498 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 APOC4-APOC2K7ER74 178 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 EDIL3O43854 480 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 APOEP02649 317 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 APOC2P02655 101 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ATP6V1C1P21283 382 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 MMP8P22894 467 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 SLC1A6P48664 564 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PTPN20Q4JDL3 420 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PDPK2PQ6A1A2 396 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 WDR49Q8IV35 697 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 COLGALT1Q8NBJ5 622 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ZSCAN18Q8TBC5 510 aaPredicted RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 UCMAQ8WVF2 138 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 MARK4Q96L34 752 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 SARS2Q9NP81 518 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 SAR1AQ9NR31 198 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 CHST12Q9NRB3 414 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 MID2Q9UJV3 735 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 AP4E1Q9UPM8 1137 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 C2CD2LO14523 706 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PMPCBO75439 489 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 CPA3P15088 417 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ZFXP17010 805 aaPredicted RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 NCKAP1LP55160 1127 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PLIN5Q00G26 463 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 MPZL3Q6UWV2 235 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 CPT1BQ92523 772 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 LRMDAQ9H2I8 198 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ARHGEF3Q9NR81 526 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 DPP3Q9NY33 737 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ACTL7BQ9Y614 415 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ADGRA3Q8IWK6 1321 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 EEF2KO00418 725 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 SNUPNO95149 360 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ASMTLO95671 621 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 GNL1P36915 607 aaPredicted RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 YWHAHQ04917 246 aaPredicted RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 TRMT5Q32P41 509 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ARHGAP18Q8N392 663 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 RDM1Q8NG50 284 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PDCD6IPQ8WUM4 868 aaKnown RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 SKA2Q8WVK7 121 aaPredicted RBP12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PTPRN2Q92932 1015 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 MFSD14AQ96MC6 490 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ZNF570Q96NI8 536 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 ZNF518BQ9C0D4 1074 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 PDP2Q9P2J9 529 aa12.84□□□□□ -0.35
SNRNP48-201ENST00000342415 SDR42E2A6NKP2 422 aa12.83□□□□□ -0.36
SNRNP48-201ENST00000342415 SPDYE16A6NNV3 312 aaPredicted RBP12.83□□□□□ -0.36
SNRNP48-201ENST00000342415 LSM8O95777 96 aaKnown RBP12.83□□□□□ -0.36
SNRNP48-201ENST00000342415 RAG1P15918 1043 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms