RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 HLA-DQA2P01906 255 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 HIRAP54198 1017 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-201ENST00000302528 NAA30Q147X3 362 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-201ENST00000302528 CYB5R4Q7L1T6 521 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 CARNMT1Q8N4J0 409 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 USP7Q93009 1102 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 KLHL4Q9C0H6 718 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 PHTF1Q9UMS5 762 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 STAU1O95793 577 aaKnown RBP10.69□□□□□ -0.7
CLIP1-201ENST00000302528 MBL2P11226 248 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-201ENST00000302528 FGFR1P11362 822 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 ALDH7A1P49419 539 aaKnown RBP10.69□□□□□ -0.7
CLIP1-201ENST00000302528 BIKQ13323 160 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 CAMK1Q14012 370 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 NECTIN1Q15223 517 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 CCDC144BQ3MJ40 725 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 ATF7IP2Q5U623 682 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 SLC20A1Q8WUM9 679 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 TMEM79Q9BSE2 394 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 ACTR8Q9H981 624 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 NEK6Q9HC98 313 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 SH3BP4Q9P0V3 963 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 PNMA8CA0A1B0GUJ8 204 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 TIMM44O43615 452 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 PLA2G6O60733 806 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 SCGNO76038 276 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 GSSP48637 474 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 OXCT1P55809 520 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 PTSQ03393 145 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 MTF1Q14872 753 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 SPANXN2Q5MJ10 180 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 TBCELQ5QJ74 424 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 FAXCQ5TGI0 409 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 CENPIQ92674 756 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-201ENST00000302528 WDR24Q96S15 920 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 SH2D3AQ9BRG2 576 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 HMG20AQ9NP66 347 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 DDIT4Q9NX09 232 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 PCDHB2Q9Y5E7 798 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 RAD51CO43502 376 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 GTF2H1P32780 548 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 ITGA9Q13797 1035 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 EMC2Q15006 297 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 FAM98BQ52LJ0 330 aaKnown RBP10.69□□□□□ -0.7
CLIP1-201ENST00000302528 FGD3Q5JSP0 725 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 TTC23Q5W5X9 447 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 FIG4Q92562 907 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 ELP3Q9H9T3 547 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 VPS51Q9UID3 782 aa10.69□□□□□ -0.7
CLIP1-201ENST00000302528 M0QYT0 321 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 PIK3CDO00329 1044 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 HLA-DRAP01903 254 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 UCHL3P15374 230 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 BCAP31P51572 246 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 CCR4P51679 360 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 KCNT1Q5JUK3 1230 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 PRMT9Q6P2P2 845 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 CCNI2Q6ZMN8 369 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 LPCAT2Q7L5N7 544 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 SCAIQ8N9R8 606 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 ZBTB10Q96DT7 871 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 ACOX2Q99424 681 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 CYLDQ9NQC7 956 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 RBM12Q9NTZ6 932 aaKnown RBP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 CMTM6Q9NX76 183 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.68□□□□□ -0.78e-7■■■■□ 22.7
CLIP1-201ENST00000302528 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 ENOPH1Q9UHY7 261 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 RWDD3Q9Y3V2 267 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 TMEM114B3SHH9 223 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 WWP2O00308 870 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 ATMINO43313 823 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 MGRN1O60291 552 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 ENDOD1O94919 500 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 CCNG1P51959 295 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 ARHGDIBP52566 201 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 GNA13Q14344 377 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 FEZF2Q8TBJ5 459 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 MRPS31Q92665 395 aaKnown RBP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 PDLIM2Q96JY6 352 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 DNAJC1Q96KC8 554 aaKnown RBP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 CDK12Q9NYV4 1490 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 A0A1W2PRG6 482 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 CDC40O60508 579 aaKnown RBP eCLIP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 SLC2A4P14672 509 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 NR6A1Q15406 480 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 PGBD2Q6P3X8 592 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 TMED8Q6PL24 325 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 HOMEZQ8IX15 550 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 EID3Q8N140 333 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 APOL4Q9BPW4 351 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 EPB41L4BQ9H329 900 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 ZNF112Q9UJU3 913 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 MROH7-TTC4A0A0A0MT08 1334 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 PLEKHG1Q9ULL1 1385 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 CPSF1Q10570 1443 aaKnown RBP10.68□□□□□ -0.7
CLIP1-201ENST00000302528 EXTL3O43909 919 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 CYP2C9P11712 490 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 ODC1P11926 461 aa10.68□□□□□ -0.7
CLIP1-201ENST00000302528 PTPN1P18031 435 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms