RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 BOLA3Q53S33 107 aa11.96□□□□□ -0.49
CUX1-202ENST00000292538 KIAA0319Q5VV43 1072 aa11.96□□□□□ -0.49
CUX1-202ENST00000292538 HFE2Q6ZVN8 426 aa11.96□□□□□ -0.49
CUX1-202ENST00000292538 CYP4V2Q6ZWL3 525 aaPredicted RBP11.96□□□□□ -0.49
CUX1-202ENST00000292538 KLF6Q99612 283 aaPredicted RBP11.96□□□□□ -0.49
CUX1-202ENST00000292538 ADAM2Q99965 735 aa11.96□□□□□ -0.49
CUX1-202ENST00000292538 STMN4Q9H169 189 aaPredicted RBP11.96□□□□□ -0.49
CUX1-202ENST00000292538 MAGED2Q9UNF1 606 aaPredicted RBP11.96□□□□□ -0.49
CUX1-202ENST00000292538 AP4E1Q9UPM8 1137 aa11.96□□□□□ -0.49
CUX1-202ENST00000292538 FAM155AB1AL88 458 aaPredicted RBP11.96□□□□□ -0.5
CUX1-202ENST00000292538 M0QYT0 321 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 TRAPPC3O43617 180 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 AP1G2O75843 785 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 KIAA0754O94854 1291 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 STAU1O95793 577 aaKnown RBP11.96□□□□□ -0.5
CUX1-202ENST00000292538 USP17L7P0C7H9 530 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 GOT1P17174 413 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 RDXP35241 583 aaKnown RBP11.96□□□□□ -0.5
CUX1-202ENST00000292538 TKTL1P51854 596 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 SNX16P57768 344 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 TFDP2Q14188 446 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 ERMARDQ5T6L9 678 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 SRLQ86TD4 932 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 CCNYQ8ND76 341 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 FBXO36Q8NEA4 188 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 PRCCQ92733 491 aaPredicted RBP11.96□□□□□ -0.5
CUX1-202ENST00000292538 RNF186Q9NXI6 227 aa11.96□□□□□ -0.5
CUX1-202ENST00000292538 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.96□□□□□ -0.53e-6■■■■□ 19.4
CUX1-202ENST00000292538 CITO14578 2027 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 MYO1CO00159 1063 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 TRPA1O75762 1119 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 TMEM63AO94886 807 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 CYBAP13498 195 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 KCNE1P15382 129 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 IL4RP24394 825 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 YWHAGP61981 247 aaKnown RBP eCLIP11.95□□□□□ -0.5
CUX1-202ENST00000292538 MORF4L2Q15014 288 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 SPDYCQ5MJ68 293 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 SYPL2Q5VXT5 272 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 PPIL6Q8IXY8 311 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 SLC7A14Q8TBB6 771 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 CFAP36Q96G28 342 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 FAXDC2Q96IV6 333 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 ETNK2Q9NVF9 386 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 A6NNZ2 444 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 MGEA5O60502 916 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 FAM107AO95990 144 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 ARL4CP56559 192 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 TUBB8Q3ZCM7 444 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 PDIK1LQ8N165 341 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 STKLD1Q8NE28 680 aa11.95□□□□□ -0.5
CUX1-202ENST00000292538 ELAC2Q9BQ52 826 aaKnown RBP11.95□□□□□ -0.5
CUX1-202ENST00000292538 CNOT10Q9H9A5 744 aaKnown RBP11.95□□□□□ -0.5
CUX1-202ENST00000292538 A0A087WUV0 522 aaPredicted RBP11.94□□□□□ -0.5
CUX1-202ENST00000292538 SEPT4O43236 478 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 FAM200BP0CF97 657 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 NCAM1P13591 858 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 MMP13P45452 471 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 CACNA2D1P54289 1103 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 ACAP1Q15027 740 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 AGMOQ6ZNB7 445 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 HACE1Q8IYU2 909 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 LRRC34Q8IZ02 419 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 CRYBG2Q8N1P7 616 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 PQLC3Q8N755 202 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 GSTCDQ8NEC7 633 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 PCED1BQ96HM7 432 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 CABS1Q96KC9 395 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 SERPINB12Q96P63 405 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 ROPN1BQ9BZX4 212 aaPredicted RBP11.94□□□□□ -0.5
CUX1-202ENST00000292538 ROPN1Q9HAT0 212 aaPredicted RBP11.94□□□□□ -0.5
CUX1-202ENST00000292538 MAD1L1Q9Y6D9 718 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 DCAF8L1A6NGE4 600 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 NPR3P17342 541 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 NUMBP49757 651 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 GJA9P57773 515 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 PCBP1Q15365 356 aaKnown RBP eCLIP11.94□□□□□ -0.56e-6■■■■■ 34.5
CUX1-202ENST00000292538 PKN2Q16513 984 aaKnown RBP11.94□□□□□ -0.5
CUX1-202ENST00000292538 DRICH1Q6PGQ1 229 aaPredicted RBP11.94□□□□□ -0.5
CUX1-202ENST00000292538 CTAGE3PQ8IX95 158 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 OTUD6BQ8N6M0 293 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 RNF34Q969K3 372 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 CHMP6Q96FZ7 201 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 PPP1R10Q96QC0 940 aaKnown RBP11.94□□□□□ -0.5
CUX1-202ENST00000292538 LGMNQ99538 433 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 SYT15Q9BQS2 421 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 TRIM56Q9BRZ2 755 aaKnown RBP11.94□□□□□ -0.5
CUX1-202ENST00000292538 DUSP16Q9BY84 665 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 ULBP1Q9BZM6 244 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 GPBP1L1Q9HC44 474 aaPredicted RBP11.94□□□□□ -0.5
CUX1-202ENST00000292538 CRTAC1Q9NQ79 661 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 GDAP2Q9NXN4 497 aa11.94□□□□□ -0.5
CUX1-202ENST00000292538 DDX20Q9UHI6 824 aaKnown RBP11.94□□□□□ -0.5
CUX1-202ENST00000292538 WDR91A4D1P6 747 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 TCP11X1B4DZS4 312 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 NRP1O14786 923 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 GPR182O15218 404 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 CDH16O75309 829 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 BDNFP23560 247 aa11.93□□□□□ -0.5
CUX1-202ENST00000292538 STX2P32856 288 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms