RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FBXO47Q5MNV8 452 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 HHATQ5VTY9 493 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 SLC9A4Q6AI14 798 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 TBC1D1Q86TI0 1168 aaPredicted RBP20.88■□□□□ 0.93
VPS53-201ENST00000291074 CCDC110Q8TBZ0 833 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 ECT2Q9H8V3 914 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 CD248Q9HCU0 757 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 SLC5A4Q9NY91 659 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 NRCAMQ92823 1304 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 SMIM28A0A1B0GU29 152 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 A6NJR5 290 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 MNAT1P51948 309 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 SLC18A1P54219 525 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 APBB1IPQ7Z5R6 666 aaPredicted RBP20.87■□□□□ 0.93
VPS53-201ENST00000291074 CFAP36Q96G28 342 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 DHX35Q9H5Z1 703 aaKnown RBP20.87■□□□□ 0.93
VPS53-201ENST00000291074 KLHL14Q9P2G3 628 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 FETUBQ9UGM5 382 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 WDR91A4D1P6 747 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 TGM2P21980 687 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 CYP2F1P24903 491 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 GBE1Q04446 702 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 FAM110CQ1W6H9 321 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 KBTBD12Q3ZCT8 623 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 OLFML2BQ68BL8 750 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 ARHGAP17Q68EM7 881 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 UNC93AQ86WB7 457 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 PARP9Q8IXQ6 854 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 FLRT1Q9NZU1 646 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 PAK5Q9P286 719 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 CPA4Q9UI42 421 aa20.87■□□□□ 0.93
VPS53-201ENST00000291074 UBQLN1Q9UMX0 589 aaKnown RBP20.87■□□□□ 0.93
VPS53-201ENST00000291074 SMAPO00193 183 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 TREHO43280 583 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 YWHAZP63104 245 aaKnown RBP20.86■□□□□ 0.93
VPS53-201ENST00000291074 ICE2Q659A1 982 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 SLC2A14Q8TDB8 520 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 LRRC8CQ8TDW0 803 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 NDRG1Q92597 394 aaKnown RBP20.86■□□□□ 0.93
VPS53-201ENST00000291074 TBCBQ99426 244 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 PARK7Q99497 189 aaKnown RBP20.86■□□□□ 0.93
VPS53-201ENST00000291074 NRDE2Q9H7Z3 1164 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 SMIM35A0A1B0GVV1 85 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 MBLAC1A4D2B0 266 aaPredicted RBP20.86■□□□□ 0.93
VPS53-201ENST00000291074 IQCA1LA6NCM1 817 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 KPNA7A9QM74 516 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 PIRO00625 290 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 MDM4O15151 490 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 CHADO15335 359 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 GNL1P36915 607 aaPredicted RBP20.86■□□□□ 0.93
VPS53-201ENST00000291074 KCNJ2P63252 427 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 ELF3P78545 371 aaPredicted RBP20.86■□□□□ 0.93
VPS53-201ENST00000291074 BST2Q10589 180 aaKnown RBP20.86■□□□□ 0.93
VPS53-201ENST00000291074 MFSD10Q14728 455 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 SNX17Q15036 470 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 PRPF39Q86UA1 669 aaKnown RBP20.86■□□□□ 0.93
VPS53-201ENST00000291074 CCDC185Q8N715 623 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 ZNF670Q9BS34 389 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 RXFP1Q9HBX9 757 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 SLC17A7Q9P2U7 560 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 GNEQ9Y223 722 aaKnown RBP20.86■□□□□ 0.93
VPS53-201ENST00000291074 MFHAS1Q9Y4C4 1052 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 NR2E3Q9Y5X4 410 aa20.86■□□□□ 0.93
VPS53-201ENST00000291074 APRTP07741 180 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 TKTP29401 623 aaKnown RBP20.85■□□□□ 0.93
VPS53-201ENST00000291074 L1CAMP32004 1257 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 SLC10A2Q12908 348 aaPredicted RBP20.85■□□□□ 0.93
VPS53-201ENST00000291074 BNIP1Q12981 228 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 TLK2Q86UE8 772 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 ANKRD52Q8NB46 1076 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 TCP10LQ8TDR4 215 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 CYTH2Q99418 400 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 TRIM33Q9UPN9 1127 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 MYO18AQ92614 2054 aaKnown RBP20.85■□□□□ 0.93
VPS53-201ENST00000291074 ATP2A2P16615 1042 aaKnown RBP20.85■□□□□ 0.93
VPS53-201ENST00000291074 BCAT1P54687 386 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 PTK7Q13308 1070 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 RNF43Q68DV7 783 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 SLC26A9Q7LBE3 791 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 KIF2BQ8N4N8 673 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 STK32AQ8WU08 396 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 USP6NLQ92738 828 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 RTP4Q96DX8 246 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 C11orf84Q9BUA3 381 aaPredicted RBP20.85■□□□□ 0.93
VPS53-201ENST00000291074 ETNK2Q9NVF9 386 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 AP4E1Q9UPM8 1137 aa20.85■□□□□ 0.93
VPS53-201ENST00000291074 FAM155BO75949 473 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 GBP2P32456 591 aaPredicted RBP20.84■□□□□ 0.93
VPS53-201ENST00000291074 BEX3Q00994 111 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 PNMA8AQ86V59 439 aaPredicted RBP20.84■□□□□ 0.93
VPS53-201ENST00000291074 FAM228AQ86W67 206 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 ARRDC4Q8NCT1 418 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 GRAMD1AQ96CP6 724 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 KCTD15Q96SI1 283 aaPredicted RBP20.84■□□□□ 0.93
VPS53-201ENST00000291074 TRIM56Q9BRZ2 755 aaKnown RBP20.84■□□□□ 0.93
VPS53-201ENST00000291074 ETNK1Q9HBU6 452 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 MTMR10Q9NXD2 777 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 STARD13Q9Y3M8 1113 aa20.84■□□□□ 0.93
VPS53-201ENST00000291074 BCLAF3A2AJT9 711 aaKnown RBP20.84■□□□□ 0.93
VPS53-201ENST00000291074 EDF1O60869 148 aaKnown RBP20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms