RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 ATXN3P54252 364 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 TFDP3Q5H9I0 405 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 HEATR6Q6AI08 1181 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 ZCCHC9Q8N567 271 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 CCNYL1Q8N7R7 359 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 BEST2Q8NFU1 509 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 BRI3BPQ8WY22 251 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 OXNAD1Q96HP4 312 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 CGRRF1Q99675 332 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 DHX33Q9H6R0 707 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 AGAP1Q9UPQ3 857 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 PABPN1LA6NDY0 278 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 DDX3YO15523 660 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 KPNA2P52292 529 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 CDK16Q00536 496 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 OCRLQ01968 901 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 DCAF4L1Q3SXM0 396 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 B3GNT9Q6UX72 402 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 PPTC7Q8NI37 304 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 PWWP2AQ96N64 755 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 TMEM109Q9BVC6 243 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 EBF2Q9HAK2 575 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 NUB1Q9Y5A7 615 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 STK25O00506 426 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 ACKR2O00590 384 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 SUPT3HO75486 399 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 UPP2O95045 317 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 RARBP10826 455 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 NCOA4Q13772 614 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 CLEC16AQ2KHT3 1053 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 DUSP28Q4G0W2 176 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 SLC44A4Q53GD3 710 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 DLK2Q6UY11 383 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 ZNF410Q86VK4 478 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 EPS8L1Q8TE68 723 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 ELMO3Q96BJ8 720 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 NMRK1Q9NWW6 199 aa11.95□□□□□ -0.5
CLSTN3-201ENST00000266546 ADAMTSL1Q8N6G6 1762 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 COL4A5P29400 1685 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 NEMP1O14524 444 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 AKR1A1P14550 325 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 GLRA2P23416 452 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 EDNRBP24530 442 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 SDC4P31431 198 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 CDR2LQ86X02 465 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 CDKL3Q8IVW4 592 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 MCOLN2Q8IZK6 566 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 PPP1R36Q96LQ0 422 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 CNBD2Q96M20 576 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 PAK5Q9P286 719 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 ARHGAP26Q9UNA1 814 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 USP20Q9Y2K6 914 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 ZNF862O60290 1169 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 EDF1O60869 148 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 C6orf222P0C671 652 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 TAC1P20366 129 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 SESN2P58004 480 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 PRAMEP78395 509 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 MCL1Q07820 350 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 PCBP1Q15365 356 aaKnown RBP eCLIP11.94□□□□□ -0.53e-14■■■■■ 42.9
CLSTN3-201ENST00000266546 FER1L6Q2WGJ9 1857 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 LRRC15Q8TF66 581 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 KAT5Q92993 513 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 ATXN7L3BQ96GX2 97 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 ZNF317Q96PQ6 595 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 XPO1O14980 1071 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 OTUD4Q01804 1114 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 FLOT2Q14254 428 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 PRPSAP1Q14558 356 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 LCA5Q86VQ0 697 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 APBA2Q99767 749 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 DDX50Q9BQ39 737 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 PCDH9Q9HC56 1237 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 ARHGEF3Q9NR81 526 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 DMAC2Q9NW81 257 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 WARS2Q9UGM6 360 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 SOX13Q9UN79 622 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 MAP1BP46821 2468 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 CDK5RAP2Q96SN8 1893 aa11.94□□□□□ -0.5
CLSTN3-201ENST00000266546 M0QYV0 167 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 ATG7O95352 703 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 FAM200BP0CF97 657 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 ADCYAP1R1P41586 468 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 CLCN3P51790 818 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 CCDC15Q0P6D6 951 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 RNF220Q5VTB9 566 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 IYDQ6PHW0 289 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 WDR49Q8IV35 697 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 ACTL9Q8TC94 416 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 ZNF398Q8TD17 642 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 MPP4Q96JB8 637 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 ACP6Q9NPH0 428 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 TBC1D23Q9NUY8 699 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 GTSE1Q9NYZ3 720 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 C2CD2LO14523 706 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 TMCC1O94876 653 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 VCPP55072 806 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 NOGQ13253 232 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 WDR72Q3MJ13 1102 aa11.93□□□□□ -0.5
CLSTN3-201ENST00000266546 TMEM259Q4ZIN3 620 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms