RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SLC22A9Q8IVM8 553 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 TAS1R2Q8TE23 839 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 ECSITQ9BQ95 431 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 PTPN3P26045 913 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 RXRGP48443 463 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 TFDP3Q5H9I0 405 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 BTNL9Q6UXG8 535 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 WNK4Q96J92 1243 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 PRMT6Q96LA8 375 aaPredicted RBP19.73■□□□□ 0.75
UPF1-201ENST00000262803 MTMR12Q9C0I1 747 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 PRR23D1E9PI22 279 aaPredicted RBP19.73■□□□□ 0.75
UPF1-201ENST00000262803 PRR23D2P0DMB1 279 aaPredicted RBP19.73■□□□□ 0.75
UPF1-201ENST00000262803 TCN1P20061 433 aaPredicted RBP19.73■□□□□ 0.75
UPF1-201ENST00000262803 SKP1P63208 163 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 KCNT1Q5JUK3 1230 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 DSG4Q86SJ6 1040 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 ZNF410Q86VK4 478 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 APLFQ8IW19 511 aaPredicted RBP19.73■□□□□ 0.75
UPF1-201ENST00000262803 LZTR1Q8N653 840 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 STK39Q9UEW8 545 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 CKMP06732 381 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 ACO1P21399 889 aaKnown RBP19.73■□□□□ 0.75
UPF1-201ENST00000262803 PTPN7P35236 360 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 FBXO36Q8NEA4 188 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 CAVIN3Q969G5 261 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 POP1Q99575 1024 aaKnown RBP19.73■□□□□ 0.75
UPF1-201ENST00000262803 ADGRB1O14514 1584 aa19.73■□□□□ 0.75
UPF1-201ENST00000262803 CREMQ03060 361 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 DENND1BQ6P3S1 775 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 THAP11Q96EK4 314 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 TMEM245Q9H330 911 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 VPS51Q9UID3 782 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 ADGRA2Q96PE1 1338 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 KIF1CO43896 1103 aaKnown RBP19.72■□□□□ 0.75
UPF1-201ENST00000262803 RTN3O95197 1032 aaPredicted RBP19.72■□□□□ 0.75
UPF1-201ENST00000262803 CASP7P55210 303 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 RHOAP61586 193 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 PURAQ00577 322 aaKnown RBP19.72■□□□□ 0.75
UPF1-201ENST00000262803 ITIH4Q14624 930 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 SAMD7Q7Z3H4 446 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 PXMP2Q9NR77 195 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 SLIT1O75093 1534 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 A0A087WZ62 844 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 MAD2L1Q13257 205 aaPredicted RBP19.72■□□□□ 0.75
UPF1-201ENST00000262803 CASP10Q92851 521 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 DCCP43146 1447 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 ALDH2P05091 517 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 THRAP10827 490 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 JAK1P23458 1154 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 PSMA4P25789 261 aaKnown RBP19.72■□□□□ 0.75
UPF1-201ENST00000262803 CHMP1BQ7LBR1 199 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 DNAAF5Q86Y56 855 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 PRKD2Q9BZL6 878 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 RPS6KB2Q9UBS0 482 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 PCDHB5Q9Y5E4 795 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 hCG_2014768A0A024R1R8 64 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 CABYRO75952 493 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 RPN2P04844 631 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 ACADMP11310 421 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 DARSP14868 501 aaKnown RBP19.72■□□□□ 0.75
UPF1-201ENST00000262803 ADRM1Q16186 407 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 IRAK1BP1Q5VVH5 260 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 RAD18Q9NS91 495 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 HEY2Q9UBP5 337 aa19.72■□□□□ 0.75
UPF1-201ENST00000262803 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.72■□□□□ 0.75
UPF1-201ENST00000262803 XYLBO75191 536 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 DGKIO75912 1065 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 MAP3K6O95382 1288 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 EXD1Q8NHP7 514 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 MAGEB18Q96M61 343 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 DCLK3Q9C098 648 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 CTNNAL1Q9UBT7 734 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 TMCC3Q9ULS5 477 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 AMHP03971 560 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 OTUD4Q01804 1114 aaKnown RBP19.71■□□□□ 0.75
UPF1-201ENST00000262803 ORC1Q13415 861 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 PKN2Q16513 984 aaKnown RBP19.71■□□□□ 0.75
UPF1-201ENST00000262803 SLC47A2Q86VL8 602 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 GALNT4Q8N4A0 578 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 PLA2G4CQ9UP65 541 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 STARD13Q9Y3M8 1113 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 PROSCO94903 275 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 ERVK-10P10266 1014 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 PSMC6P62333 389 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 TBX2Q13207 712 aaPredicted RBP19.71■□□□□ 0.75
UPF1-201ENST00000262803 CCDC85BQ15834 202 aaPredicted RBP19.71■□□□□ 0.75
UPF1-201ENST00000262803 LRRN4CLQ8ND94 238 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 BTN2A2Q8WVV5 523 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 TECPR2O15040 1411 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 DIP2BQ9P265 1576 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 MEGF6O75095 1541 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 COPAP53621 1224 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 BLOC1S5Q8TDH9 187 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 CXorf56Q9H5V9 222 aa19.71■□□□□ 0.75
UPF1-201ENST00000262803 IFRD1O00458 451 aaPredicted RBP19.7■□□□□ 0.74
UPF1-201ENST00000262803 TERB1Q8NA31 727 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 TMEM176AQ96HP8 235 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 KIAA1683Q9H0B3 1180 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 RPS6KL1Q9Y6S9 549 aa19.7■□□□□ 0.74
UPF1-201ENST00000262803 GRK2P25098 689 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms