RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 CST9Q5W186 159 aa16.83■□□□□ 0.28
UBE3D-201ENST00000237186 C1orf228Q6PIY5 440 aa16.83■□□□□ 0.28
UBE3D-201ENST00000237186 DCAKDQ8WVC6 231 aa16.83■□□□□ 0.28
UBE3D-201ENST00000237186 ZNF560Q96MR9 790 aa16.83■□□□□ 0.28
UBE3D-201ENST00000237186 PITPNM3Q9BZ71 974 aa16.83■□□□□ 0.28
UBE3D-201ENST00000237186 DPEP3Q9H4B8 488 aa16.83■□□□□ 0.28
UBE3D-201ENST00000237186 KIF9Q9HAQ2 790 aa16.83■□□□□ 0.28
UBE3D-201ENST00000237186 KLC4Q9NSK0 619 aa16.83■□□□□ 0.28
UBE3D-201ENST00000237186 SPTLC1O15269 473 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 FAM155BO75949 473 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 ZWINTO95229 277 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 KRT4P19013 534 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 L1CAMP32004 1257 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 ELK3P41970 407 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 PSEN2P49810 448 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 NRLP54845 237 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 IGDCC3Q8IVU1 814 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 C4orf33Q8N1A6 199 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 DNAJB3Q8WWF6 145 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 NRDE2Q9H7Z3 1164 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 RXFP1Q9HBX9 757 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 GPATCH2LQ9NWQ4 482 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 KLHL14Q9P2G3 628 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 KCNN4O15554 427 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 CA4P22748 312 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 AKAP5P24588 427 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 LMO2P25791 158 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 RBL1P28749 1068 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 TAF6P49848 677 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 CCDC15Q0P6D6 951 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 PRAMEF19Q5SWL8 479 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 STRADAQ7RTN6 431 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 NME8Q8N427 588 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 C7orf31Q8N865 590 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 MCUQ8NE86 351 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 TMEM40Q8WWA1 233 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 PRDM16Q9HAZ2 1276 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 RAB6BQ9NRW1 208 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 MTMR10Q9NXD2 777 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 PIN4Q9Y237 131 aaKnown RBP16.82■□□□□ 0.28
UBE3D-201ENST00000237186 Q9Y3F1 56 aa16.82■□□□□ 0.28
UBE3D-201ENST00000237186 CITO14578 2027 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 CFAP73A6NFT4 308 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 ATP2C2O75185 946 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 ZBED1O96006 694 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 C1QAP02745 245 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 CRYBB1P53674 252 aaPredicted RBP16.81■□□□□ 0.28
UBE3D-201ENST00000237186 BNIP1Q12981 228 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 EFTUD2Q15029 972 aaKnown RBP eCLIP16.81■□□□□ 0.28
UBE3D-201ENST00000237186 SLC1A5Q15758 541 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 OLFML2BQ68BL8 750 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 TLK2Q86UE8 772 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 CDKL3Q8IVW4 592 aaPredicted RBP16.81■□□□□ 0.28
UBE3D-201ENST00000237186 APPL2Q8NEU8 664 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 SLC44A1Q8WWI5 657 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 LPIN3Q9BQK8 851 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 SNX25Q9H3E2 840 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 GRID1Q9ULK0 1009 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 RALGAPA2Q2PPJ7 1873 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 ZNF236Q9UL36 1845 aa16.81■□□□□ 0.28
UBE3D-201ENST00000237186 TCRBV9S1A1TA0A576 114 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 TM9SF1O15321 606 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 GCATO75600 419 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 UBOX5O94941 541 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 PDGFRBP09619 1106 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 CCDC130P13994 396 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 CYP2F1P24903 491 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 HOXC8P31273 242 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 CPT1AP50416 773 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 HUNKP57058 714 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 SF3A3Q12874 501 aaKnown RBP eCLIP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 ZKSCAN8Q15776 578 aaPredicted RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 SV2CQ496J9 727 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 EFHC1Q5JVL4 640 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 CYB5D1Q6P9G0 228 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 PSTKQ8IV42 348 aaKnown RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 TAB3Q8N5C8 712 aaPredicted RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 TOP6BLQ8N6T0 577 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 BANPQ8N9N5 519 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 LRRC39Q96DD0 335 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 MRRFQ96E11 262 aaKnown RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 TNIP3Q96KP6 325 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 PAIP2Q9BPZ3 127 aaKnown RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 KLC2Q9H0B6 622 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 RNF39Q9H2S5 420 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 CHMP2BQ9UQN3 213 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 HEY1Q9Y5J3 304 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 SCN1AP35498 2009 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 TREHO43280 583 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 TFE3P19532 575 aaPredicted RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 WARSP23381 471 aaKnown RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 GBP2P32456 591 aaPredicted RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 ZNF200P98182 395 aaPredicted RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 SLC45A4Q5BKX6 768 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 SH2D5Q6ZV89 423 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 ZNF276Q8N554 614 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 FITM2Q8N6M3 262 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 HNRNPABQ99729 332 aaKnown RBP16.8■□□□□ 0.28
UBE3D-201ENST00000237186 ADAM33Q9BZ11 813 aa16.8■□□□□ 0.28
UBE3D-201ENST00000237186 VPS11Q9H270 941 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms