RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 SLC30A4O14863 429 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 ADAM23O75077 832 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 TULP3O75386 442 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 APODP05090 189 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 RARGP13631 454 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 MCCD1P59942 119 aaPredicted RBP23.34■■□□□ 1.33
VTI1B-201ENST00000216456 GAD2Q05329 585 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 CRY1Q16526 586 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 DCAF17Q5H9S7 520 aaPredicted RBP23.34■■□□□ 1.33
VTI1B-201ENST00000216456 KIAA1958Q8N8K9 716 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 SLC4A11Q8NBS3 891 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 RLN3Q8WXF3 142 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 HEXIM2Q96MH2 286 aaKnown RBP23.34■■□□□ 1.33
VTI1B-201ENST00000216456 CYLDQ9NQC7 956 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 CISHQ9NSE2 258 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 RAB20Q9NX57 234 aa23.34■■□□□ 1.33
VTI1B-201ENST00000216456 CETN3O15182 167 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 EPB41P11171 864 aaKnown RBP23.33■■□□□ 1.33
VTI1B-201ENST00000216456 GBP1P32455 592 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 MPLP40238 635 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 WASP42768 502 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 KIF11P52732 1056 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 RAD23BP54727 409 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 AASDHQ4L235 1098 aaPredicted RBP23.33■■□□□ 1.33
VTI1B-201ENST00000216456 PLA2G2CQ5R387 149 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 TCERG1LQ5VWI1 586 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 TPGS1Q6ZTW0 290 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 RASSF3Q86WH2 238 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 MIB1Q86YT6 1006 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 FBXL13Q8NEE6 735 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 BHMTQ93088 406 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 DUSP16Q9BY84 665 aa23.33■■□□□ 1.33
VTI1B-201ENST00000216456 MTPAPQ9NVV4 582 aaKnown RBP eCLIP23.33■■□□□ 1.33
VTI1B-201ENST00000216456 ABCA7Q8IZY2 2146 aa23.32■■□□□ 1.32
VTI1B-201ENST00000216456 TULP2O00295 520 aa23.32■■□□□ 1.32
VTI1B-201ENST00000216456 HOXC11O43248 304 aaPredicted RBP23.32■■□□□ 1.32
VTI1B-201ENST00000216456 ZNF806P0C7X5 589 aa23.32■■□□□ 1.32
VTI1B-201ENST00000216456 GTF2H1P32780 548 aa23.32■■□□□ 1.32
VTI1B-201ENST00000216456 ATP5C1P36542 298 aaKnown RBP23.32■■□□□ 1.32
VTI1B-201ENST00000216456 EIF2DP41214 584 aaKnown RBP23.32■■□□□ 1.32
VTI1B-201ENST00000216456 GRIA2P42262 883 aa23.32■■□□□ 1.32
VTI1B-201ENST00000216456 MRPS21P82921 87 aaKnown RBP23.32■■□□□ 1.32
VTI1B-201ENST00000216456 ENPEPQ07075 957 aa23.32■■□□□ 1.32
VTI1B-201ENST00000216456 ZNF658Q5TYW1 1059 aaPredicted RBP23.32■■□□□ 1.32
VTI1B-201ENST00000216456 NDRG1Q92597 394 aaKnown RBP23.32■■□□□ 1.32
VTI1B-201ENST00000216456 LOXL4Q96JB6 756 aa23.32■■□□□ 1.32
VTI1B-201ENST00000216456 NAGPAQ9UK23 515 aa23.32■■□□□ 1.32
VTI1B-201ENST00000216456 A0A0A0MRY4 1105 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 TBC1D3BA6NDS4 549 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 NEDD8-MDP1E9PL57 170 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 CD44P16070 742 aaKnown RBP23.31■■□□□ 1.32
VTI1B-201ENST00000216456 SDHBP21912 280 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 KCNA4P22459 653 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 CREB5Q02930 508 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 LRMPQ12912 555 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 C10orf120Q5SQS8 335 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 TOGARAM2Q6ZUX3 1019 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 HTR3DQ70Z44 454 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 ZC3H3Q8IXZ2 948 aaKnown RBP23.31■■□□□ 1.32
VTI1B-201ENST00000216456 CCDC150Q8NCX0 1101 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 OTUB2Q96DC9 234 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 CNOT6LQ96LI5 555 aaKnown RBP23.31■■□□□ 1.32
VTI1B-201ENST00000216456 ACOX2Q99424 681 aa23.31■■□□□ 1.32
VTI1B-201ENST00000216456 CIZ1Q9ULV3 898 aaPredicted RBP23.31■■□□□ 1.32
VTI1B-201ENST00000216456 HMBSP08397 361 aa23.3■■□□□ 1.32
VTI1B-201ENST00000216456 C10orf76Q5T2E6 689 aa23.3■■□□□ 1.32
VTI1B-201ENST00000216456 C12orf50Q8NA57 414 aaPredicted RBP23.3■■□□□ 1.32
VTI1B-201ENST00000216456 SPATA20Q8TB22 786 aa23.3■■□□□ 1.32
VTI1B-201ENST00000216456 HMGB4Q8WW32 186 aa23.3■■□□□ 1.32
VTI1B-201ENST00000216456 TMEM176AQ96HP8 235 aa23.3■■□□□ 1.32
VTI1B-201ENST00000216456 DNAJC17Q9NVM6 304 aaKnown RBP23.3■■□□□ 1.32
VTI1B-201ENST00000216456 PLK2Q9NYY3 685 aa23.3■■□□□ 1.32
VTI1B-201ENST00000216456 DEC1Q9P2X7 70 aa23.3■■□□□ 1.32
VTI1B-201ENST00000216456 USP3Q9Y6I4 520 aa23.3■■□□□ 1.32
VTI1B-201ENST00000216456 GOLGA6L4A6NEF3 574 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 KLKB1P03952 638 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 TNFRSF4P43489 277 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 PPM1JQ5JR12 505 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 BTBD8Q5XKL5 378 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 EGFLAMQ63HQ2 1017 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 PIGZQ86VD9 579 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 SMARCE1Q969G3 411 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 GSDMAQ96QA5 445 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 BBS2Q9BXC9 721 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 PNPLA8Q9NP80 782 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 RMND1Q9NWS8 449 aa23.29■■□□□ 1.32
VTI1B-201ENST00000216456 TCRBV21S2A2A0A5A6 115 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 PALM2-AKAP2B1ALY0 433 aaPredicted RBP23.28■■□□□ 1.32
VTI1B-201ENST00000216456 PATE3B3GLJ2 98 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 PRRT4C9JH25 899 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 STC2O76061 302 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 CALCAP01258 141 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 TYRP14679 529 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 ELF2Q15723 593 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 USP39Q53GS9 565 aaKnown RBP23.28■■□□□ 1.32
VTI1B-201ENST00000216456 PMS2CLQ68D20 193 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 Q6ZNB5 142 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 CCDC186Q7Z3E2 898 aa23.28■■□□□ 1.32
VTI1B-201ENST00000216456 ZNF513Q8N8E2 541 aaPredicted RBP23.28■■□□□ 1.32
VTI1B-201ENST00000216456 TERB1Q8NA31 727 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms