RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ANP32DO95626 131 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PFKFB1P16118 471 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 UBA1P22314 1058 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CCNE1P24864 410 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 HNRNPH1P31943 449 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 SREBF1P36956 1147 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 SMAD3P84022 425 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 SF3A3Q12874 501 aaKnown RBP eCLIP5.21□□□□□ -1.582e-17■■■■■ 37.8
SCN1A-218ENST00000640036 TMEM259Q4ZIN3 620 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 FASTKD1Q53R41 847 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 XKR4Q5GH76 650 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 LRRC8BQ6P9F7 803 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 LUZP2Q86TE4 346 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 HOMEZQ8IX15 550 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 AVL9Q8NBF6 648 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 COPS5Q92905 334 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 RNPEPQ9H4A4 650 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PHPT1Q9NRX4 125 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 SCHIP1Q9P0W5 487 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 FAM198AQ9UFP1 575 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PTPRJQ12913 1337 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 LRRC14BA6NHZ5 514 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ACKR2O00590 384 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 RASGRF2O14827 1237 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 KATNA1O75449 491 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ITGALP20701 1170 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 AGXTP21549 392 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 OR1E1P30953 314 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CASP14P31944 242 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 NCALDP61601 193 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 DUSP4Q13115 394 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ANKRD20A4Q4UJ75 823 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ANKRD20A8PQ5CZ79 823 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ANKRD20A2Q5SQ80 823 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ANKRD20A1Q5TYW2 823 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 C8orf74Q6P047 294 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ARMCX6Q7L4S7 300 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ACOT1Q86TX2 421 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ZSCAN30Q86W11 494 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 EID3Q8N140 333 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SLC26A7Q8TE54 656 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 BAP1Q92560 729 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 MAGOHBQ96A72 148 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 PNKPQ96T60 521 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CNOT1A5YKK6 2376 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 A6NCN8 305 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 PIK3R2O00459 728 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 KCNK3O14649 394 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 APOL1O14791 398 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 AVILO75366 819 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 FGF18O76093 207 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CFHP08603 1231 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CHRNA3P32297 505 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SHMT1P34896 483 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 PNOCQ13519 176 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 TARBP2Q15633 366 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 IZUMO3Q5VZ72 239 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 RHOT2Q8IXI1 618 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 NUP93Q8N1F7 819 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 TEX9Q8N6V9 391 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 DEPDC1BQ8WUY9 529 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ERLEC1Q96DZ1 483 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ZFP42Q96MM3 310 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 TBC1D32Q96NH3 1257 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ALG13Q9NP73 1137 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 MRPL40Q9NQ50 206 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CDY1Q9Y6F8 540 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 RAMP2O60895 175 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 MYBL1P10243 752 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 PYGBP11216 843 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ESRRAP11474 423 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SARSP49591 514 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SEC13P55735 322 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 UBE3AQ05086 875 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 COASYQ13057 564 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 PDAP1Q13442 181 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SLC39A14Q15043 492 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SPATA1Q5VX52 437 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 GPIHBP1Q8IV16 184 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 FAM98AQ8NCA5 519 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 DCBLD2Q96PD2 775 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 PANX2Q96RD6 677 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CBX8Q9HC52 389 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 POLD4Q9HCU8 107 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ATP13A1Q9HD20 1204 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 KCTD5Q9NXV2 234 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 LIMA1Q9UHB6 759 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ARIH2O95376 493 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 SLFN14P0C7P3 912 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ALOX15P16050 662 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 BDNFP23560 247 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 WASP42768 502 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ADKP55263 362 aaKnown RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 PCSK7Q16549 785 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 FAAH2Q6GMR7 532 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 HJURPQ8NCD3 748 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 CLIC6Q96NY7 704 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 C11orf70Q9BRQ4 267 aa5.2□□□□□ -1.58
SCN1A-218ENST00000640036 ACE2Q9BYF1 805 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-218ENST00000640036 TRIM15Q9C019 465 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms