RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 NDRG1Q92597 394 aaKnown RBP12.32□□□□□ -0.44
CLN6-223ENST00000637823 CENPIQ92674 756 aaPredicted RBP12.32□□□□□ -0.44
CLN6-223ENST00000637823 GOLGA1Q92805 767 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 FAM149B1Q96BN6 582 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 MS4A14Q96JA4 679 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 CFAP57Q96MR6 1250 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 SLC2A13Q96QE2 648 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 NAP1L3Q99457 506 aaPredicted RBP12.32□□□□□ -0.44
CLN6-223ENST00000637823 POPDC2Q9HBU9 364 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 RXFP1Q9HBX9 757 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 DDX56Q9NY93 547 aaKnown RBP12.32□□□□□ -0.44
CLN6-223ENST00000637823 RRN3Q9NYV6 651 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 IL37Q9NZH6 218 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 AFF4Q9UHB7 1163 aaKnown RBP12.32□□□□□ -0.44
CLN6-223ENST00000637823 SLC27A5Q9Y2P5 690 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 LCHNA4D1U4 455 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 LINC01553A4QN01 128 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 YJEFN3A6XGL0 299 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 E7ENQ6 273 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 PGRMC1O00264 195 aaKnown RBP12.31□□□□□ -0.44
CLN6-223ENST00000637823 PDE2AO00408 941 aaPredicted RBP12.31□□□□□ -0.44
CLN6-223ENST00000637823 ZRANB2O95218 330 aaKnown RBP eCLIP12.31□□□□□ -0.44
CLN6-223ENST00000637823 CXCL14O95715 111 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 TRUB2O95900 331 aaKnown RBP12.31□□□□□ -0.44
CLN6-223ENST00000637823 RB1P06400 928 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 PYGMP11217 842 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 ATF2P15336 505 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 MIPP30301 263 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 CTNNB1P35222 781 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 CETN2P41208 172 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 SLC5A3P53794 718 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 DUSP4Q13115 394 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 SHHQ15465 462 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 C15orf59Q2T9L4 293 aaPredicted RBP12.31□□□□□ -0.44
CLN6-223ENST00000637823 SLC25A52Q3SY17 297 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 MGAT5BQ3V5L5 792 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 DCAF6Q58WW2 860 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 C9orf50Q5SZB4 431 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 SEL1L2Q5TEA6 688 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 DAB2IPQ5VWQ8 1189 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 STRADAQ7RTN6 431 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 BHLHA9Q7RTU4 235 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 TTC9BQ8N6N2 239 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 EXD1Q8NHP7 514 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 NT5C3BQ969T7 300 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 RNPC3Q96LT9 517 aaKnown RBP12.31□□□□□ -0.44
CLN6-223ENST00000637823 C11orf84Q9BUA3 381 aaPredicted RBP12.31□□□□□ -0.44
CLN6-223ENST00000637823 ZBP1Q9H171 429 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 STAP1Q9ULZ2 295 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 SCML2Q9UQR0 700 aa12.31□□□□□ -0.44
CLN6-223ENST00000637823 EFCAB8A8MWE9 144 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 C5orf67F2Z3F1 127 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 CAPN9O14815 690 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 ENDOD1O94919 500 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 FYNP06241 537 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 YWHAQP27348 245 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 GPR15P49685 360 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 COPS2P61201 443 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 ATP11AP98196 1134 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 SLC25A11Q02978 314 aaKnown RBP12.3□□□□□ -0.44
CLN6-223ENST00000637823 UBE3AQ05086 875 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 ZNF211Q13398 564 aaPredicted RBP12.3□□□□□ -0.44
CLN6-223ENST00000637823 BOLA3Q53S33 107 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 ODF2Q5BJF6 829 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 SH3PXD2AQ5TCZ1 1133 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 BSPRYQ5W0U4 402 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 DENND5BQ6ZUT9 1274 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 HFE2Q6ZVN8 426 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 MON1AQ86VX9 555 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 ARHGAP18Q8N392 663 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 FAM172AQ8WUF8 416 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 RBM41Q96IZ5 413 aaKnown RBP12.3□□□□□ -0.44
CLN6-223ENST00000637823 SAMD11Q96NU1 681 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 NPY6RQ99463 290 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 SEPT5Q99719 369 aaPredicted RBP12.3□□□□□ -0.44
CLN6-223ENST00000637823 CRISPLD1Q9H336 500 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 ABCC13Q9NSE7 274 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 TMEM51Q9NW97 253 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 USP18Q9UMW8 372 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 PCDHA11Q9Y5I1 949 aa12.3□□□□□ -0.44
CLN6-223ENST00000637823 COL4A4P53420 1690 aaPredicted RBP12.29□□□□□ -0.44
CLN6-223ENST00000637823 FAM92AA1XBS5 289 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 PRPSAP2O60256 369 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 TADA3O75528 432 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 SEC24AO95486 1093 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 FGGP02679 453 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 NCAM1P13591 858 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 TCF4P15884 667 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 DNAJB2P25686 324 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 ELF1P32519 619 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 GTF2F1P35269 517 aaKnown RBP eCLIP12.29□□□□□ -0.441e-6■■■■□ 26
CLN6-223ENST00000637823 YWHAGP61981 247 aaKnown RBP eCLIP12.29□□□□□ -0.44
CLN6-223ENST00000637823 CDO1Q16878 200 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 LONRF2Q1L5Z9 754 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 ATP13A4Q4VNC1 1196 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 ZFYVE27Q5T4F4 411 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 SDHAF4Q5VUM1 108 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 SYPL2Q5VXT5 272 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 BTBD8Q5XKL5 378 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 TMC7Q7Z402 723 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms