RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 FUKQ8N0W3 1084 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 ZMIZ2Q8NF64 920 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 SCAMP5Q8TAC9 235 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 PARD3BQ8TEW8 1205 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 FBXO32Q969P5 355 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 WBP2Q969T9 261 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 CCDC127Q96BQ5 260 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 SPACA7Q96KW9 195 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 CAPN10Q9HC96 672 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 SPHK2Q9NRA0 654 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 DMAC2Q9NW81 257 aa17.43■□□□□ 0.38
CLN3-255ENST00000637100 ASPMQ8IZT6 3477 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 A0A1W2PQF6 199 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 FAM221BA6H8Z2 402 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 TULP1O00294 542 aaPredicted RBP17.42■□□□□ 0.38
CLN3-255ENST00000637100 STX6O43752 255 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 CUTAO60888 179 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 YEATS4O95619 227 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 SLC5A3P53794 718 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 CDH8P55286 799 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 TRPC3Q13507 836 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 KNOP1Q1ED39 458 aaKnown RBP17.42■□□□□ 0.38
CLN3-255ENST00000637100 TRMT11Q7Z4G4 463 aaKnown RBP17.42■□□□□ 0.38
CLN3-255ENST00000637100 TMEM25Q86YD3 366 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 SLC9A9Q8IVB4 645 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 BBS7Q8IWZ6 715 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 TMEFF1Q8IYR6 380 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 TERB1Q8NA31 727 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 NUSAP1Q9BXS6 441 aaKnown RBP17.42■□□□□ 0.38
CLN3-255ENST00000637100 ADAM33Q9BZ11 813 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 SDCBP2Q9H190 292 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 CCSER2Q9H7U1 834 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 DMAP1Q9NPF5 467 aaPredicted RBP17.42■□□□□ 0.38
CLN3-255ENST00000637100 MARK1Q9P0L2 795 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 DEC1Q9P2X7 70 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 ZMIZ1Q9ULJ6 1067 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 MYO18AQ92614 2054 aaKnown RBP17.42■□□□□ 0.38
CLN3-255ENST00000637100 ATRXP46100 2492 aa17.42■□□□□ 0.38
CLN3-255ENST00000637100 SPEGQ15772 3267 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 SCAMP3O14828 347 aaKnown RBP17.41■□□□□ 0.38
CLN3-255ENST00000637100 VNN1O95497 513 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 TOP3BO95985 862 aaKnown RBP17.41■□□□□ 0.38
CLN3-255ENST00000637100 ABL1P00519 1130 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 ENGP17813 658 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 GABRG2P18507 467 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 PGFP49763 221 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 CYP2J2P51589 502 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 STK38Q15208 465 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 LYSMD4Q5XG99 296 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 CEP76Q8TAP6 659 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 DHX58Q96C10 678 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 SMARCD1Q96GM5 515 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 TNIP3Q96KP6 325 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 SMOQ99835 787 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 SCNM1Q9BWG6 230 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 KLF16Q9BXK1 252 aaPredicted RBP17.41■□□□□ 0.38
CLN3-255ENST00000637100 SMYD3Q9H7B4 428 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 NXF1Q9UBU9 619 aaKnown RBP17.41■□□□□ 0.38
CLN3-255ENST00000637100 ATP8B3O60423 1300 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 PI4KAP42356 2102 aa17.41■□□□□ 0.38
CLN3-255ENST00000637100 TCRBV21S2A2A0A5A6 115 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 TBC1D3BA6NDS4 549 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 CACNG3O60359 315 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 NTSR1P30989 418 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 KDSRQ06136 332 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 FOXC1Q12948 553 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 DUOXA1Q1HG43 343 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 SLC36A4Q6YBV0 504 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 MIB1Q86YT6 1006 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 ZNF276Q8N554 614 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 ZNF513Q8N8E2 541 aaPredicted RBP17.4■□□□□ 0.38
CLN3-255ENST00000637100 DEFB124Q8NES8 71 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 HMGB4Q8WW32 186 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 GABRG3Q99928 467 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 CYLDQ9NQC7 956 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 FBXO10Q9UK96 956 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 SLC6A14Q9UN76 642 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 SH3BP1Q9Y3L3 701 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 NEUROG3Q9Y4Z2 214 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 PCDH15Q96QU1 1955 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 GON4LQ3T8J9 2241 aa17.4■□□□□ 0.38
CLN3-255ENST00000637100 LRRIQ3A6PVS8 624 aaPredicted RBP17.39■□□□□ 0.37
CLN3-255ENST00000637100 MAP3K13O43283 966 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 AP5Z1O43299 807 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 BEST1O76090 585 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 CAPNS1P04632 268 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 SERPINF2P08697 491 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 ITPKAP23677 461 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 CASP4P49662 377 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 MCCD1P59942 119 aaPredicted RBP17.39■□□□□ 0.37
CLN3-255ENST00000637100 NCOA4Q13772 614 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 ZACNQ401N2 412 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 ZNF667Q5HYK9 610 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 BTBD8Q5XKL5 378 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 KLHDC10Q6PID8 442 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 NUDT18Q6ZVK8 323 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 UNC93AQ86WB7 457 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 NELFCDQ8IXH7 590 aa17.39■□□□□ 0.37
CLN3-255ENST00000637100 GOLGA5Q8TBA6 731 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms