RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 RAD54BQ9Y620 910 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 HS3ST3B1Q9Y662 390 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 CFAP20Q9Y6A4 193 aaKnown RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 DISP1Q96F81 1524 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 TUBGCP6Q96RT7 1819 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 KDM5CP41229 1560 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 NEURL4Q96JN8 1562 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 CEP170BQ9Y4F5 1589 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 UBR1Q8IWV7 1749 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 RNF17Q9BXT8 1623 aaKnown RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ZMYM2Q9UBW7 1377 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 MAGI3Q5TCQ9 1506 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ZMYM4Q5VZL5 1548 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 PLCH1Q4KWH8 1693 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 A0A1W2PPL8 197 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 E2F8A0AVK6 867 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 A1L4Q6 167 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CFAP69A5D8W1 941 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 GOLGA6CA6NDK9 693 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 GOLGA6BA6NDN3 693 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 TMEM232C9JQI7 657 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 F2RL2O00254 374 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SLC16A6O15403 523 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 LINC01565O15544 149 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 AKAP10O43572 662 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SGTAO43765 313 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 GCATO75600 419 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 RNF8O76064 485 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ZRANB2O95218 330 aaKnown RBP eCLIP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ARIH2O95376 493 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ANXA1P04083 346 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 NGFRP08138 427 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 GOLGA6DP0CG33 693 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ZKSCAN1P17029 563 aaPredicted RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ATF3P18847 181 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 EDNRBP24530 442 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 YY1P25490 414 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 TNFRSF8P28908 595 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 FXR1P51114 621 aaKnown RBP eCLIP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 MAP2K6P52564 334 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 EPHB1P54762 984 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 TPTEP56180 551 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SOX8P57073 446 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ZXDBP98169 803 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SATB1Q01826 763 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ID2Q02363 134 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 MCL1Q07820 350 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 NOGQ13253 232 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SNAPC2Q13487 334 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 FGL2Q14314 439 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 HABP2Q14520 560 aaPredicted RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 FAM187BQ17R55 369 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 PLEKHG6Q3KR16 790 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 MINDY4Q4G0A6 757 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 AMOTQ4VCS5 1084 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 C9orf50Q5SZB4 431 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 OTUD3Q5T2D3 398 aaPredicted RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 MEX3CQ5U5Q3 659 aaKnown RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CAPRIN2Q6IMN6 1127 aaKnown RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 NPNTQ6UXI9 565 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CCDC149Q6ZUS6 474 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 Q6ZWC4 215 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CUZD1Q86UP6 607 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 DTX2Q86UW9 622 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CCAR1Q8IX12 1150 aaKnown RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 RAVER1Q8IY67 606 aaKnown RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 MYO1HQ8N1T3 1032 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 FAM109AQ8N4B1 249 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ARFGAP1Q8N6T3 406 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 FAM46DQ8NEK8 389 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 STAG1Q8WVM7 1258 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ATG4AQ8WYN0 398 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 MVB12AQ96EY5 273 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SLC35A4Q96G79 324 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CDK5RAP3Q96JB5 506 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CCDC136Q96JN2 1154 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 PUS7Q96PZ0 661 aaKnown RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SNX18Q96RF0 628 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CGRRF1Q99675 332 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 RHOBTB2Q9BYZ6 727 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SIK2Q9H0K1 926 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 GLOD4Q9HC38 313 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 NMRK2Q9NPI5 230 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SACM1LQ9NTJ5 587 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 TYW1Q9NV66 732 aaKnown RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 GOLGA6AQ9NYA3 693 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CALCOCO1Q9P1Z2 691 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 CFAP97Q9P2B7 532 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 PNMA8BQ9ULN7 279 aaPredicted RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 AGAP1Q9UPQ3 857 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 UTP18Q9Y5J1 556 aaKnown RBP eCLIP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 SOGA1O94964 1423 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 PHLPP1O60346 1717 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 TTBK1Q5TCY1 1321 aaPredicted RBP1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ABCC10Q5T3U5 1492 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 PLB1Q6P1J6 1458 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 LMTK3Q96Q04 1460 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 MROH1Q8NDA8 1641 aa1.37□□□□□ -2.19
SMARCB1-209ENST00000635578 ALKQ9UM73 1620 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms