RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 HPS3Q969F9 1004 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 CTHRC1Q96CG8 243 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 NLRP4Q96MN2 994 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 ZPBPQ9BS86 351 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 VN1R3Q9BXE9 311 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 FER1L4A9Z1Z3 1794 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 IGLV5-39A0A0G2JS06 123 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 A0A1W2PPL8 197 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 CLIC1O00299 241 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 RGS10O43665 173 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 TBC1D4O60343 1298 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 RASAL1O95294 804 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 CDC25AP30304 524 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 UQCRC1P31930 480 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 AMPD3Q01432 767 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 SLC13A2Q13183 592 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 RAB32Q13637 225 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 PFKFB3Q16875 520 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-208ENST00000625916 MANEAQ5SRI9 462 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 DCAF12L1Q5VU92 463 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 CACHD1Q5VU97 1274 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 C18orf65Q6ZTR6 163 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 ZBTB46Q86UZ6 589 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 ZBTB8BQ8NAP8 495 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-208ENST00000625916 C1GALT1C1Q96EU7 318 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 CAMK1GQ96NX5 476 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 TRIM54Q9BYV2 358 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 SLCO5A1Q9H2Y9 848 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 ZBTB40Q9NUA8 1239 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 ICKQ9UPZ9 632 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 CDY1Q9Y6F8 540 aa3.61□□□□□ -1.83
SCN1A-208ENST00000625916 A0A088AWK7 358 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-208ENST00000625916 TMEM233B4DJY2 109 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 OFD1O75665 1012 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 SYF2O95926 243 aaKnown RBP3.6□□□□□ -1.83
SCN1A-208ENST00000625916 CD63P08962 238 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 ATF7P17544 494 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-208ENST00000625916 TIRAPP58753 221 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 CFHR3Q02985 330 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 SLC14A1Q13336 389 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 KRTAP27-1Q3LI81 207 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 UBE2Q1Q7Z7E8 422 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 SLC25A28Q96A46 364 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 HIC2Q96JB3 615 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 SCNM1Q9BWG6 230 aa3.6□□□□□ -1.83
SCN1A-208ENST00000625916 MRPL44Q9H9J2 332 aaKnown RBP3.6□□□□□ -1.83
SCN1A-208ENST00000625916 SEMA4BQ9NPR2 832 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-208ENST00000625916 GAR1Q9NY12 217 aaKnown RBP3.6□□□□□ -1.83
SCN1A-208ENST00000625916 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-208ENST00000625916 EME2A4GXA9 379 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-208ENST00000625916 C4orf47A7E2U8 309 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 EXOC5O00471 708 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 INPPL1O15357 1258 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 KITP10721 976 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 NPR1P16066 1061 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 IL6STP40189 918 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-208ENST00000625916 ARFIP2P53365 341 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 INSCQ1MX18 579 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 FAM110CQ1W6H9 321 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 PRTGQ2VWP7 1150 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 ATAT1Q5SQI0 421 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 IFIT1BQ5T764 474 aaKnown RBP3.59□□□□□ -1.83
SCN1A-208ENST00000625916 DAAM2Q86T65 1068 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 DCP1BQ8IZD4 617 aaKnown RBP3.59□□□□□ -1.83
SCN1A-208ENST00000625916 C12orf76Q8N812 135 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-208ENST00000625916 WDYHV1Q96HA8 205 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 ZBTB45Q96K62 511 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-208ENST00000625916 PPP1R9BQ96SB3 815 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 NUP88Q99567 741 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-208ENST00000625916 TRIM5Q9C035 493 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 USP29Q9HBJ7 922 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 TXLNGQ9NUQ3 528 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 TMEM45AQ9NWC5 275 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 NOTCH4Q99466 2003 aa3.59□□□□□ -1.83
SCN1A-208ENST00000625916 FYB1O15117 783 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 CD3EAPO15446 510 aaKnown RBP3.58□□□□□ -1.84
SCN1A-208ENST00000625916 AP1G1O43747 822 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 CT47B1P0C2W7 299 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-208ENST00000625916 PF4V1P10720 104 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 TNFRSF1BP20333 461 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 HTR1BP28222 390 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 ITGA8P53708 1063 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 ZXDBP98169 803 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 B4GALNT1Q00973 533 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 ZNF267Q14586 743 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-208ENST00000625916 KPNB1Q14974 876 aaKnown RBP3.58□□□□□ -1.84
SCN1A-208ENST00000625916 ZDHHC24Q6UX98 284 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 USP43Q70EL4 1123 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 B4GALNT4Q76KP1 1039 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 CHMP4CQ96CF2 233 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 EDC3Q96F86 508 aaKnown RBP3.58□□□□□ -1.84
SCN1A-208ENST00000625916 NT5C1BQ96P26 610 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 TMEM204Q9BSN7 226 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 TRIM36Q9NQ86 728 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 XPNPEP3Q9NQH7 507 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 ARL8BQ9NVJ2 186 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 IP6K2Q9UHH9 426 aa3.58□□□□□ -1.84
SCN1A-208ENST00000625916 C2CD4BA6NLJ0 364 aa3.57□□□□□ -1.84
SCN1A-208ENST00000625916 KRT86O43790 486 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms