RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 LETM1O95202 739 aaPredicted RBP14.58□□□□□ -0.08
UPF1-205ENST00000598209 DCNP07585 359 aaKnown RBP14.58□□□□□ -0.08
UPF1-205ENST00000598209 ARSAP15289 507 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 TARSP26639 723 aaKnown RBP14.58□□□□□ -0.08
UPF1-205ENST00000598209 USP8P40818 1118 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 PLA2G4AP47712 749 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 SOX9P48436 509 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 IFNAR2P48551 515 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 TKTL1P51854 596 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 MLLT6P55198 1093 aaPredicted RBP14.58□□□□□ -0.08
UPF1-205ENST00000598209 RUNX3Q13761 415 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 PDGFRLQ15198 375 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 ITPRIPL2Q3MIP1 535 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 DPY19L2P1Q6NXN4 242 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 SCD5Q86SK9 330 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 DDX42Q86XP3 938 aaKnown RBP eCLIP14.58□□□□□ -0.08
UPF1-205ENST00000598209 CCDC105Q8IYK2 499 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 ANKRD20A12PQ8NF67 263 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 OSCP1Q8WVF1 389 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 FAM3CQ92520 227 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 SECISBP2LQ93073 1101 aaKnown RBP14.58□□□□□ -0.08
UPF1-205ENST00000598209 MSANTD3Q96H12 275 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 LSM14BQ9BX40 385 aaKnown RBP14.58□□□□□ -0.08
UPF1-205ENST00000598209 OSBPL6Q9BZF3 934 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 KCNH6Q9H252 994 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 LRRC4Q9HBW1 653 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 CYLDQ9NQC7 956 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 CFAP97Q9P2B7 532 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 NAGPAQ9UK23 515 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 MRPS17Q9Y2R5 130 aaKnown RBP14.58□□□□□ -0.08
UPF1-205ENST00000598209 WNT6Q9Y6F9 365 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 SPECC1L-ADORA2AF8WAN1 911 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 THAP12O43422 761 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 MED7O43513 233 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 RARGP13631 454 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 ZNF18P17022 549 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 GNA15P30679 374 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 CTHP32929 405 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 PSEN1P49768 467 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 NUBP1P53384 320 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 COPB1P53618 953 aaKnown RBP14.57□□□□□ -0.08
UPF1-205ENST00000598209 ADIGQ0VDE8 80 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 KLHDC7AQ5VTJ3 777 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 RALGPS2Q86X27 583 aaPredicted RBP14.57□□□□□ -0.08
UPF1-205ENST00000598209 SLC35F5Q8WV83 523 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 KCTD13Q8WZ19 329 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 ZFRQ96KR1 1074 aaKnown RBP14.57□□□□□ -0.08
UPF1-205ENST00000598209 NELL2Q99435 816 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 PRRX2Q99811 253 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 BPIFA3Q9BQP9 254 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 FUCA2Q9BTY2 467 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 ULBP1Q9BZM6 244 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 HSD3B7Q9H2F3 369 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 ACP6Q9NPH0 428 aa14.57□□□□□ -0.08
UPF1-205ENST00000598209 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.57□□□□□ -0.08
UPF1-205ENST00000598209 LIMA1Q9UHB6 759 aaKnown RBP14.57□□□□□ -0.08
UPF1-205ENST00000598209 NDRG2Q9UN36 371 aaKnown RBP14.57□□□□□ -0.08
UPF1-205ENST00000598209 SYCE3A1L190 88 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 OTOL1A6NHN0 477 aaPredicted RBP14.56□□□□□ -0.08
UPF1-205ENST00000598209 SCAMP3O14828 347 aaKnown RBP14.56□□□□□ -0.08
UPF1-205ENST00000598209 TBX18O95935 607 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 ZBED1O96006 694 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 RALAP11233 206 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 CDK11BP21127 795 aaKnown RBP14.56□□□□□ -0.08
UPF1-205ENST00000598209 ATP5C1P36542 298 aaKnown RBP14.56□□□□□ -0.08
UPF1-205ENST00000598209 RGS7P49802 495 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 RAPGEF1Q13905 1077 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 EML3Q32P44 896 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 C10orf120Q5SQS8 335 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 FKBP15Q5T1M5 1219 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 SMYD5Q6GMV2 418 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 PM20D1Q6GTS8 502 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 PMF1Q6P1K2 205 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 C1orf228Q6PIY5 440 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 TXNDC11Q6PKC3 985 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 SIX6OS1Q8N1H7 587 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 ARHGAP18Q8N392 663 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 CPA6Q8N4T0 437 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 KIAA1958Q8N8K9 716 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 DTWD2Q8NBA8 298 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 PRSS33Q8NF86 280 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 ZNF606Q8WXB4 792 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 NDRG1Q92597 394 aaKnown RBP14.56□□□□□ -0.08
UPF1-205ENST00000598209 ATP2A3Q93084 1043 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 LINC00597Q9H2U6 94 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 ECT2Q9H8V3 914 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 CLIC5Q9NZA1 410 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 DLGAP2Q9P1A6 1054 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 NUDT5Q9UKK9 219 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 FHOD1Q9Y613 1164 aa14.56□□□□□ -0.08
UPF1-205ENST00000598209 ATG2BQ96BY7 2078 aa14.55□□□□□ -0.08
UPF1-205ENST00000598209 E2F8A0AVK6 867 aa14.55□□□□□ -0.08
UPF1-205ENST00000598209 SMTNL1A8MU46 457 aa14.55□□□□□ -0.08
UPF1-205ENST00000598209 FOXN3O00409 490 aaPredicted RBP14.55□□□□□ -0.08
UPF1-205ENST00000598209 MDM4O15151 490 aa14.55□□□□□ -0.08
UPF1-205ENST00000598209 NCAM2O15394 837 aa14.55□□□□□ -0.08
UPF1-205ENST00000598209 GALR2O43603 387 aaPredicted RBP14.55□□□□□ -0.08
UPF1-205ENST00000598209 GABBR2O75899 941 aa14.55□□□□□ -0.08
UPF1-205ENST00000598209 PNMA6AP0CW24 399 aaPredicted RBP14.55□□□□□ -0.08
UPF1-205ENST00000598209 IRF1P10914 325 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms