RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PPP1R37O75864 691 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 WARSP23381 471 aaKnown RBP10.78□□□□□ -0.68
TRIM28-210ENST00000597618 LMO2P25791 158 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 ANO4Q32M45 955 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 EGFLAMQ63HQ2 1017 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 MCTP1Q6DN14 999 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 GRAMD4Q6IC98 578 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 IL27RAQ6UWB1 636 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 SFR1Q86XK3 245 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 GALNT15Q8N3T1 639 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 OVCA2Q8WZ82 227 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 LARP4BQ92615 738 aaKnown RBP10.78□□□□□ -0.68
TRIM28-210ENST00000597618 HPDLQ96IR7 371 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 ZFRQ96KR1 1074 aaKnown RBP10.78□□□□□ -0.68
TRIM28-210ENST00000597618 ZSCAN31Q96LW9 406 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-210ENST00000597618 CDC6Q99741 560 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 GABRG3Q99928 467 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 CD248Q9HCU0 757 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 SPHK2Q9NRA0 654 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 HCN2Q9UL51 889 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 KIF3AQ9Y496 699 aa10.78□□□□□ -0.68
TRIM28-210ENST00000597618 TK2O00142 265 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 FLRT2O43155 660 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 COCHO43405 550 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 EIF5BO60841 1220 aaKnown RBP10.77□□□□□ -0.69
TRIM28-210ENST00000597618 DKK1O94907 266 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 PDGFRBP09619 1106 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 GARTP22102 1010 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 YWHAQP27348 245 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 CD6P30203 668 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 DDIT3P35638 169 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 MATKP42679 507 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 ABCG1P45844 678 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 TUBP50607 506 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 CYP4F3Q08477 520 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 MDH1BQ5I0G3 518 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 HECTD3Q5T447 861 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 L1TD1Q5T7N2 865 aaKnown RBP10.77□□□□□ -0.69
TRIM28-210ENST00000597618 SCARA3Q6AZY7 606 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 KIAA1324Q6UXG2 1013 aaKnown RBP10.77□□□□□ -0.69
TRIM28-210ENST00000597618 HS2ST1Q7LGA3 356 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 BBS7Q8IWZ6 715 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 ZCCHC9Q8N567 271 aaKnown RBP10.77□□□□□ -0.69
TRIM28-210ENST00000597618 BAHD1Q8TBE0 780 aaPredicted RBP10.77□□□□□ -0.69
TRIM28-210ENST00000597618 SCFD1Q8WVM8 642 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 DNASE2BQ8WZ79 361 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 FBXO32Q969P5 355 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 ANKRD36BP1Q96IX9 119 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 FAM84AQ96KN4 292 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 MRGPRX1Q96LB2 322 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 ACCSQ96QU6 501 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 KIF2CQ99661 725 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 STRA6Q9BX79 667 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 ELOVL4Q9GZR5 314 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 GAREM1Q9H706 876 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 MRPL44Q9H9J2 332 aaKnown RBP10.77□□□□□ -0.69
TRIM28-210ENST00000597618 PDE11AQ9HCR9 933 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 TM7SF3Q9NS93 570 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 DNAJC17Q9NVM6 304 aaKnown RBP10.77□□□□□ -0.69
TRIM28-210ENST00000597618 TOR4AQ9NXH8 423 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 SEL1LQ9UBV2 794 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 PCDHGB2Q9Y5G2 931 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 TENM4Q6N022 2769 aa10.77□□□□□ -0.69
TRIM28-210ENST00000597618 PLXNB3Q9ULL4 1909 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 TRABD2BA6NFA1 517 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 GFRA2O00451 464 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 CACNG3O60359 315 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 CILPO75339 1184 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 RTN3O95197 1032 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-210ENST00000597618 TNNC2P02585 160 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 NCAM1P13591 858 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 MAOBP27338 520 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 LONP1P36776 959 aaKnown RBP10.76□□□□□ -0.69
TRIM28-210ENST00000597618 KCNA1Q09470 495 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 IFRD2Q12894 506 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-210ENST00000597618 METTL3Q86U44 580 aaKnown RBP10.76□□□□□ -0.69
TRIM28-210ENST00000597618 TMEM25Q86YD3 366 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 ZSWIM2Q8NEG5 633 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 CADM4Q8NFZ8 388 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 NOC3LQ8WTT2 800 aaKnown RBP10.76□□□□□ -0.69
TRIM28-210ENST00000597618 XPO6Q96QU8 1125 aaKnown RBP10.76□□□□□ -0.69
TRIM28-210ENST00000597618 MMS19Q96T76 1030 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 ACOX2Q99424 681 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 NACA2Q9H009 215 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 MIR1-1HGQ9H1L0 117 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 SLC6A17Q9H1V8 727 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 SNX25Q9H3E2 840 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 IL21RQ9HBE5 538 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 CD93Q9NPY3 652 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 FNDC3AQ9Y2H6 1198 aaKnown RBP10.76□□□□□ -0.69
TRIM28-210ENST00000597618 RAD54BQ9Y620 910 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 MYO18AQ92614 2054 aaKnown RBP10.76□□□□□ -0.69
TRIM28-210ENST00000597618 NAV2Q8IVL1 2488 aa10.76□□□□□ -0.69
TRIM28-210ENST00000597618 GOLGA8IPA6NC78 632 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 GOLGA8JA6NMD2 632 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 E9PAM4 449 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 NEDD8-MDP1E9PL57 170 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 TRIM24O15164 1050 aa10.75□□□□□ -0.69
TRIM28-210ENST00000597618 BCAT2O15382 392 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-210ENST00000597618 ATXN1LP0C7T5 689 aaKnown RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms