RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 CHORDC1Q9UHD1 332 aaPredicted RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 KLK13Q9UKR3 277 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 SLC6A14Q9UN76 642 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 BAHCC1Q9P281 2608 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 ZNF638Q14966 1978 aaKnown RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 ASCC3Q8N3C0 2202 aaKnown RBP10.58□□□□□ -0.72
LIG1-209ENST00000596104 AKAP13Q12802 2813 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 IGHV1OR15-9A0A0B4J2B8 117 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 FAM221BA6H8Z2 402 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 A8MXQ7 604 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 AP5Z1O43299 807 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 GREM1O60565 184 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 CAPNS1P04632 268 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 SERPINF2P08697 491 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 HOXB2P14652 356 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 TNNI1P19237 187 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 PDCP20941 246 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 NTSR1P30989 418 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 TUBP50607 506 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 SLC5A3P53794 718 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 MYL6P60660 151 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 FAM193AP78312 1265 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 RPL6Q02878 288 aaKnown RBP10.58□□□□□ -0.72
LIG1-209ENST00000596104 ZNF33AQ06730 810 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 E2F4Q16254 413 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 C10orf76Q5T2E6 689 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 BTBD8Q5XKL5 378 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 SLC36A4Q6YBV0 504 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 TRMT11Q7Z4G4 463 aaKnown RBP10.58□□□□□ -0.72
LIG1-209ENST00000596104 FAM35AQ86V20 835 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 TMEM25Q86YD3 366 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 DEFB119Q8N690 84 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 CEP76Q8TAP6 659 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 CCDC127Q96BQ5 260 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 SMYD3Q9H7B4 428 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 CCSER2Q9H7U1 834 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 VRTNQ9H8Y1 702 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 SPHK2Q9NRA0 654 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 SH3BP1Q9Y3L3 701 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 STARD13Q9Y3M8 1113 aa10.58□□□□□ -0.72
LIG1-209ENST00000596104 ASPMQ8IZT6 3477 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 NUP205Q92621 2012 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 PTPRDP23468 1912 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 CD59P13987 128 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 NDUFV2P19404 249 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 SYT1P21579 422 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 ATICP31939 592 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 WASP42768 502 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 PGFP49763 221 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 CYP2J2P51589 502 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 ATXN3P54252 364 aaPredicted RBP10.57□□□□□ -0.72
LIG1-209ENST00000596104 CDH8P55286 799 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 GFPT1Q06210 699 aaPredicted RBP10.57□□□□□ -0.72
LIG1-209ENST00000596104 RING1Q06587 406 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 EHHADHQ08426 723 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 PREPLQ4J6C6 727 aaPredicted RBP10.57□□□□□ -0.72
LIG1-209ENST00000596104 FAM26FQ5R3K3 315 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 EGFLAMQ63HQ2 1017 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 CNNM4Q6P4Q7 775 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 SLC41A1Q8IVJ1 513 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 HDDC3Q8N4P3 179 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 MINDY1Q8N5J2 469 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 XXYLT1Q8NBI6 393 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 ZMIZ2Q8NF64 920 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 OR2I1PQ8NGU4 316 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 PLEKHO2Q8TD55 490 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 SCFD1Q8WVM8 642 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 ACOX2Q99424 681 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 GTPBP2Q9BX10 602 aaKnown RBP10.57□□□□□ -0.72
LIG1-209ENST00000596104 DMAP1Q9NPF5 467 aaPredicted RBP10.57□□□□□ -0.72
LIG1-209ENST00000596104 GMIPQ9P107 970 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 NXF1Q9UBU9 619 aaKnown RBP10.57□□□□□ -0.72
LIG1-209ENST00000596104 THADAQ6YHU6 1953 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 GON4LQ3T8J9 2241 aa10.57□□□□□ -0.72
LIG1-209ENST00000596104 HELZP42694 1942 aaKnown RBP10.56□□□□□ -0.72
LIG1-209ENST00000596104 H0Y626 953 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 TAF4O00268 1085 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 ARHGAP33O14559 1287 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 CLIC2O15247 247 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 CACNG3O60359 315 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 OPHN1O60890 802 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 GJB3O75712 270 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 TRIM16O95361 564 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 NASPP49321 788 aaPredicted RBP10.56□□□□□ -0.72
LIG1-209ENST00000596104 SNRPFP62306 86 aaKnown RBP10.56□□□□□ -0.72
LIG1-209ENST00000596104 ASIC1P78348 528 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 TRPC3Q13507 836 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 ANO4Q32M45 955 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 LRSAM1Q6UWE0 723 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 HTR3DQ70Z44 454 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 RABEPKQ7Z6M1 372 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 RAB44Q7Z6P3 723 aaPredicted RBP10.56□□□□□ -0.72
LIG1-209ENST00000596104 NELFCDQ8IXH7 590 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 C12orf56Q8IXR9 622 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 FUKQ8N0W3 1084 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 CHCHD4Q8N4Q1 142 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 TRIML1Q8N9V2 468 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 LINC00301Q8NCQ3 95 aa10.56□□□□□ -0.72
LIG1-209ENST00000596104 IPO4Q8TEX9 1081 aaKnown RBP10.56□□□□□ -0.72
LIG1-209ENST00000596104 SYAP1Q96A49 352 aaPredicted RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms