RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 IMPG2Q9BZV3 1241 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 CSNK1G1Q9HCP0 422 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 RALGAPA1Q6GYQ0 2036 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 RHOBTB1O94844 696 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 ZDHHC11BP0C7U3 371 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 TUBP50607 506 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 LIMK1P53667 647 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 INCA1Q0VD86 236 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 EDRF1Q3B7T1 1238 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 JAKMIP2Q96AA8 810 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 OTUB2Q96DC9 234 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 CYFIP2Q96F07 1278 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 CCDC34Q96HJ3 373 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 ZFRQ96KR1 1074 aaKnown RBP21.65■■□□□ 1.06
SHMT1-209ENST00000582653 TMEM8AQ9HCN3 771 aa21.65■■□□□ 1.06
SHMT1-209ENST00000582653 DGKEP52429 567 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 NUCB2P80303 420 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 ENPEPQ07075 957 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 SF3A2Q15428 464 aaKnown RBP21.64■■□□□ 1.05
SHMT1-209ENST00000582653 KRT39Q6A163 491 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 GPRIN1Q7Z2K8 1008 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 C12orf50Q8NA57 414 aaPredicted RBP21.64■■□□□ 1.05
SHMT1-209ENST00000582653 TSTD1Q8NFU3 115 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 WBP2Q969T9 261 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 HNRNPABQ99729 332 aaKnown RBP21.64■■□□□ 1.05
SHMT1-209ENST00000582653 DUSP9Q99956 384 aaKnown RBP21.64■■□□□ 1.05
SHMT1-209ENST00000582653 NT5C1AQ9BXI3 368 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 NIF3L1Q9GZT8 377 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 CYP3A43Q9HB55 503 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 RMND1Q9NWS8 449 aa21.64■■□□□ 1.05
SHMT1-209ENST00000582653 CETN3O15182 167 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 ADH1CP00326 375 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 FAM200BP0CF97 657 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 PMS1P54277 932 aaKnown RBP21.63■■□□□ 1.05
SHMT1-209ENST00000582653 SEC13P55735 322 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 MCCD1P59942 119 aaPredicted RBP21.63■■□□□ 1.05
SHMT1-209ENST00000582653 ELF2Q15723 593 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 CCDC6Q16204 474 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 CRY1Q16526 586 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 AASDHQ4L235 1098 aaPredicted RBP21.63■■□□□ 1.05
SHMT1-209ENST00000582653 ZNF394Q53GI3 561 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 USP39Q53GS9 565 aaKnown RBP21.63■■□□□ 1.05
SHMT1-209ENST00000582653 ZNF658Q5TYW1 1059 aaPredicted RBP21.63■■□□□ 1.05
SHMT1-209ENST00000582653 CLEC20AQ6ZU45 233 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 RASSF3Q86WH2 238 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 DDX1Q92499 740 aaKnown RBP21.63■■□□□ 1.05
SHMT1-209ENST00000582653 FBXO44Q9H4M3 255 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 MMP17Q9ULZ9 603 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 PCDHA5Q9Y5H7 936 aa21.63■■□□□ 1.05
SHMT1-209ENST00000582653 HHLA1C9JL84 531 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 TM4SF5O14894 197 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 DCLK1O15075 740 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 CILPO75339 1184 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 KAT7O95251 611 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 APODP05090 189 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 EPB41P11171 864 aaKnown RBP21.62■■□□□ 1.05
SHMT1-209ENST00000582653 GTF2H1P32780 548 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 GRIA2P42262 883 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 TNFRSF4P43489 277 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 GAD2Q05329 585 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 MESP2Q0VG99 397 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 HSF5Q4G112 596 aaPredicted RBP21.62■■□□□ 1.05
SHMT1-209ENST00000582653 LY6G5CQ5SRR4 150 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 ANKRD40Q6AI12 368 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 C11orf74Q86VG3 221 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 SFTPA1Q8IWL2 248 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 CCDC33Q8N5R6 958 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 CCDC150Q8NCX0 1101 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 GSDMAQ96QA5 445 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 VPS45Q9NRW7 570 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 SH3BP1Q9Y3L3 701 aa21.62■■□□□ 1.05
SHMT1-209ENST00000582653 EML5Q05BV3 1969 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.61■■□□□ 1.05
SHMT1-209ENST00000582653 TBX18O95935 607 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 ADRB1P08588 477 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 IRF1P10914 325 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 ADH5P11766 374 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 TRIM21P19474 475 aaKnown RBP21.61■■□□□ 1.05
SHMT1-209ENST00000582653 MPLP40238 635 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 MXI1P50539 228 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 PPM1JQ5JR12 505 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 IL31Q6EBC2 164 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 ISM2Q6H9L7 571 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 C12orf40Q86WS4 652 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 TATDN2Q93075 761 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 SMARCE1Q969G3 411 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 CNOT6LQ96LI5 555 aaKnown RBP21.61■■□□□ 1.05
SHMT1-209ENST00000582653 NACA2Q9H009 215 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 TLR8Q9NR97 1041 aaKnown RBP21.61■■□□□ 1.05
SHMT1-209ENST00000582653 RXFP3Q9NSD7 469 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 OSER1Q9NX31 292 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 RAB20Q9NX57 234 aa21.61■■□□□ 1.05
SHMT1-209ENST00000582653 TRIM49BA6NDI0 452 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 CYP26A1O43174 497 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 SMC2O95347 1197 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 ACO1P21399 889 aaKnown RBP21.6■■□□□ 1.05
SHMT1-209ENST00000582653 KIR2DL1P43626 348 aaPredicted RBP21.6■■□□□ 1.05
SHMT1-209ENST00000582653 PPP1R26Q5T8A7 1209 aaPredicted RBP21.6■■□□□ 1.05
SHMT1-209ENST00000582653 TMEM92Q6UXU6 159 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 HTR3DQ70Z44 454 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms