RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 OTUB2Q96DC9 234 aa16.36■□□□□ 0.21
SF3B3-215ENST00000577085 NAGPAQ9UK23 515 aa16.36■□□□□ 0.21
SF3B3-215ENST00000577085 LSM7Q9UK45 103 aaKnown RBP16.36■□□□□ 0.21
SF3B3-215ENST00000577085 COQ4Q9Y3A0 265 aa16.36■□□□□ 0.21
SF3B3-215ENST00000577085 HELZP42694 1942 aaKnown RBP16.36■□□□□ 0.21
SF3B3-215ENST00000577085 F5P12259 2224 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 GNA14O95837 355 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 CYP17A1P05093 508 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 ZDHHC11BP0C7U3 371 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 RALAP11233 206 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 ADH5P11766 374 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 CD19P15391 556 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 PSEN1P49768 467 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 RAD23BP54727 409 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 SIM2Q14190 667 aaPredicted RBP16.35■□□□□ 0.21
SF3B3-215ENST00000577085 DHCR24Q15392 516 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 CAMK4Q16566 473 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 NAIF1Q69YI7 327 aaPredicted RBP16.35■□□□□ 0.21
SF3B3-215ENST00000577085 CEP68Q76N32 757 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 GPRIN1Q7Z2K8 1008 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 SLC4A11Q8NBS3 891 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 RPLP0P6Q8NHW5 317 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 ACDQ96AP0 544 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 FBRSL1Q9HCM7 1045 aaKnown RBP16.35■□□□□ 0.21
SF3B3-215ENST00000577085 HESX1Q9UBX0 185 aa16.35■□□□□ 0.21
SF3B3-215ENST00000577085 A0A1W2PQH9 124 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.34■□□□□ 0.21
SF3B3-215ENST00000577085 PPP1R3GB7ZBB8 358 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 HHLA1C9JL84 531 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 K7ESF4 209 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 RARGP13631 454 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 SEC13P55735 322 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 STX17P56962 302 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 GAD2Q05329 585 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 LPAL2Q16609 132 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 ANO4Q32M45 955 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 PREPLQ4J6C6 727 aaPredicted RBP16.34■□□□□ 0.21
SF3B3-215ENST00000577085 SGO2Q562F6 1265 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 C10orf120Q5SQS8 335 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 TTI2Q6NXR4 508 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.34■□□□□ 0.21
SF3B3-215ENST00000577085 CREBRFQ8IUR6 639 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 ARHGAP18Q8N392 663 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 TRIML1Q8N9V2 468 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 NT5C1BQ96P26 610 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 CDK5RAP1Q96SZ6 601 aaKnown RBP16.34■□□□□ 0.21
SF3B3-215ENST00000577085 DUSP9Q99956 384 aaKnown RBP16.34■□□□□ 0.21
SF3B3-215ENST00000577085 DNMT3LQ9UJW3 386 aa16.34■□□□□ 0.21
SF3B3-215ENST00000577085 MYH10P35580 1976 aa16.33■□□□□ 0.21
SF3B3-215ENST00000577085 TBX18O95935 607 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 APODP05090 189 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 CCDC192P0DO97 292 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 BMP6P22004 513 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 HOXA6P31267 233 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 KIF11P52732 1056 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 DMWDQ09019 674 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 GOLGA7BQ2TAP0 167 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 ARHGAP17Q68EM7 881 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 PKN3Q6P5Z2 889 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 FOXR2Q6PJQ5 311 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 NUDT18Q6ZVK8 323 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 CCDC186Q7Z3E2 898 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 PPM1KQ8N3J5 372 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 DCLK2Q8N568 766 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 CAMKK1Q8N5S9 505 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 GPR161Q8N6U8 529 aaKnown RBP16.33■□□□□ 0.2
SF3B3-215ENST00000577085 ANKRD52Q8NB46 1076 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 PNKPQ96T60 521 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 CYLDQ9NQC7 956 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 C2orf42Q9NWW7 574 aa16.33■□□□□ 0.2
SF3B3-215ENST00000577085 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.33■□□□□ 0.2
SF3B3-215ENST00000577085 OPRD1P41143 372 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 EIF2DP41214 584 aaKnown RBP16.32■□□□□ 0.2
SF3B3-215ENST00000577085 PLA2G4AP47712 749 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 PXNP49023 591 aaPredicted RBP16.32■□□□□ 0.2
SF3B3-215ENST00000577085 PGFP49763 221 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 BCAT1P54687 386 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 C2orf27AQ580R0 203 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 LY6G5CQ5SRR4 150 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 LAIR1Q6GTX8 287 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 RHBDF2Q6PJF5 856 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 TMEM270Q6UE05 265 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 RSRC2Q7L4I2 434 aaKnown RBP16.32■□□□□ 0.2
SF3B3-215ENST00000577085 SYT13Q7L8C5 426 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 WDR5BQ86VZ2 330 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 MIB1Q86YT6 1006 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 BBS7Q8IWZ6 715 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 FANCMQ8IYD8 2048 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 ZFRQ96KR1 1074 aaKnown RBP16.32■□□□□ 0.2
SF3B3-215ENST00000577085 IPO9Q96P70 1041 aaKnown RBP16.32■□□□□ 0.2
SF3B3-215ENST00000577085 SRRTQ9BXP5 876 aaKnown RBP16.32■□□□□ 0.2
SF3B3-215ENST00000577085 UBXN6Q9BZV1 441 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 NMUR1Q9HB89 426 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 LRRC4Q9HBW1 653 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 ARHGEF4Q9NR80 690 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 KIAA1468Q9P260 1216 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 TSPAN16Q9UKR8 245 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 KIAA1257Q9ULG3 409 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 PCDHB4Q9Y5E5 795 aa16.32■□□□□ 0.2
SF3B3-215ENST00000577085 P4HA2O15460 535 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms