RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 KIF26AQ9ULI4 1882 aaPredicted RBP19.1■□□□□ 0.65
CCDC40-213ENST00000574933 A0A087X0T9 212 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 A0A1W2PRU2 124 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 ERBB2P04626 1255 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 FAM228BP0C875 321 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 LCP1P13796 627 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 WEE1P30291 646 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 NSFP46459 744 aaKnown RBP19.1■□□□□ 0.65
CCDC40-213ENST00000574933 TUBP50607 506 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 TFF2Q03403 129 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 C1QBPQ07021 282 aaKnown RBP19.1■□□□□ 0.65
CCDC40-213ENST00000574933 IFRD2Q12894 506 aaPredicted RBP19.1■□□□□ 0.65
CCDC40-213ENST00000574933 MON1BQ7L1V2 547 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 BEND5Q7L4P6 421 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 SCUBE3Q8IX30 993 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 PDLIM2Q96JY6 352 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 ISCUQ9H1K1 167 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 ATXN3LQ9H3M9 355 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 SEPT11Q9NVA2 429 aaKnown RBP19.1■□□□□ 0.65
CCDC40-213ENST00000574933 ASNSD1Q9NWL6 643 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 CLIC5Q9NZA1 410 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.1■□□□□ 0.65
CCDC40-213ENST00000574933 GDE1Q9NZC3 331 aa19.1■□□□□ 0.65
CCDC40-213ENST00000574933 ZFP37Q9Y6Q3 630 aaPredicted RBP19.1■□□□□ 0.65
CCDC40-213ENST00000574933 SPTBN5Q9NRC6 3674 aaKnown RBP19.09■□□□□ 0.65
CCDC40-213ENST00000574933 RTN2O75298 545 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 GLI1P08151 1106 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 CEBPBP17676 345 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 ZNF268Q14587 947 aaPredicted RBP19.09■□□□□ 0.65
CCDC40-213ENST00000574933 SLC18A3Q16572 532 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 OLFML1Q6UWY5 402 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 XYLT1Q86Y38 959 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 NPAS3Q8IXF0 933 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 ATXN2LQ8WWM7 1075 aaKnown RBP19.09■□□□□ 0.65
CCDC40-213ENST00000574933 MRPS31Q92665 395 aaKnown RBP19.09■□□□□ 0.65
CCDC40-213ENST00000574933 PHF7Q9BWX1 381 aaPredicted RBP19.09■□□□□ 0.65
CCDC40-213ENST00000574933 TASP1Q9H6P5 420 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 NHEJ1Q9H9Q4 299 aaPredicted RBP19.09■□□□□ 0.65
CCDC40-213ENST00000574933 TAS2R14Q9NYV8 317 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 CHORDC1Q9UHD1 332 aaPredicted RBP19.09■□□□□ 0.65
CCDC40-213ENST00000574933 NAGPAQ9UK23 515 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 CDH7Q9ULB5 785 aa19.09■□□□□ 0.65
CCDC40-213ENST00000574933 YJEFN3A6XGL0 299 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 E7ENQ6 273 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 PIK3R2O00459 728 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 OLFM2O95897 454 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 OAS1P00973 400 aaKnown RBP19.08■□□□□ 0.64
CCDC40-213ENST00000574933 CALB1P05937 261 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 PGFP49763 221 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 SLC6A3Q01959 620 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 TEAD2Q15562 447 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 ARHGAP15Q53QZ3 475 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 KLHDC10Q6PID8 442 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 POTEHQ6S545 545 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 SLC26A9Q7LBE3 791 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 TMTC1Q8IUR5 882 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 TMEM139Q8IV31 216 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 MCOLN2Q8IZK6 566 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 CLEC4CQ8WTT0 213 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 NDRG1Q92597 394 aaKnown RBP19.08■□□□□ 0.64
CCDC40-213ENST00000574933 FGF13Q92913 245 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 MCRS1Q96EZ8 462 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 NMUR1Q9HB89 426 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.08■□□□□ 0.64
CCDC40-213ENST00000574933 OSER1Q9NX31 292 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 ADAM22Q9P0K1 906 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 WDR35Q9P2L0 1181 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 STRIP2Q9ULQ0 834 aa19.08■□□□□ 0.64
CCDC40-213ENST00000574933 C5orf42Q9H799 3197 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 A0A1W2PQH9 124 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 LTFP02788 710 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 GJA1P17302 382 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 YWHAGP61981 247 aaKnown RBP eCLIP19.07■□□□□ 0.64
CCDC40-213ENST00000574933 CYP4F8P98187 520 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 EFHC1Q5JVL4 640 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 OR6B2Q6IFH4 312 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 ALKBH5Q6P6C2 394 aaKnown RBP19.07■□□□□ 0.64
CCDC40-213ENST00000574933 MMS22LQ6ZRQ5 1243 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 TOGARAM2Q6ZUX3 1019 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 FAM183BPQ6ZVS7 135 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 ARCQ7LC44 396 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 OTOP3Q7RTS5 596 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 CCDC170Q8IYT3 715 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 ANP32BQ92688 251 aaKnown RBP19.07■□□□□ 0.64
CCDC40-213ENST00000574933 KHSRPQ92945 711 aaKnown RBP eCLIP19.07■□□□□ 0.64
CCDC40-213ENST00000574933 CCDC42Q96M95 316 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 MYADMQ96S97 322 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 CDK5RAP1Q96SZ6 601 aaKnown RBP19.07■□□□□ 0.64
CCDC40-213ENST00000574933 C11orf70Q9BRQ4 267 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.07■□□□□ 0.64
CCDC40-213ENST00000574933 SLC46A2Q9BY10 475 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 SYNCQ9H7C4 482 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 EPS15L1Q9UBC2 864 aa19.07■□□□□ 0.64
CCDC40-213ENST00000574933 TCRBV5S1A1TA0A578 114 aa19.06■□□□□ 0.64
CCDC40-213ENST00000574933 AKR1B10O60218 316 aa19.06■□□□□ 0.64
CCDC40-213ENST00000574933 LCA5LO95447 670 aa19.06■□□□□ 0.64
CCDC40-213ENST00000574933 FTLP02792 175 aaPredicted RBP19.06■□□□□ 0.64
CCDC40-213ENST00000574933 HECTD3Q5T447 861 aa19.06■□□□□ 0.64
CCDC40-213ENST00000574933 STXBP5Q5T5C0 1151 aa19.06■□□□□ 0.64
CCDC40-213ENST00000574933 GPR158Q5T848 1215 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms