RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PLCB2Q00722 1185 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 TTC30AQ86WT1 665 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 SCML4Q8N228 414 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 SYN2Q92777 582 aaPredicted RBP21.69■■□□□ 1.06
VPS53-210ENST00000571456 TMEM30AQ9NV96 361 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 HCFC1R1Q9NWW0 138 aa21.69■■□□□ 1.06
VPS53-210ENST00000571456 LSM8O95777 96 aaKnown RBP21.68■■□□□ 1.06
VPS53-210ENST00000571456 MYL4P12829 197 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 GABRR2P28476 465 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 ACADSBP45954 432 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 PSEN1P49768 467 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 ZBED6P86452 979 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 PDE4CQ08493 712 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 RAB41Q5JT25 222 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 TRIM72Q6ZMU5 477 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 PIGZQ86VD9 579 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 SLC47A2Q86VL8 602 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 VSTM4Q8IW00 320 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 EPS8L1Q8TE68 723 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 SLC35F5Q8WV83 523 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 BAP1Q92560 729 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 MRPS31Q92665 395 aaKnown RBP21.68■■□□□ 1.06
VPS53-210ENST00000571456 MRFAP1L1Q96HT8 127 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 AIPL1Q9NZN9 384 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 CAPN11Q9UMQ6 739 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 MAGED2Q9UNF1 606 aaPredicted RBP21.68■■□□□ 1.06
VPS53-210ENST00000571456 LUC7L2Q9Y383 392 aaKnown RBP21.68■■□□□ 1.06
VPS53-210ENST00000571456 PKD1L2Q7Z442 2459 aa21.68■■□□□ 1.06
VPS53-210ENST00000571456 FASNP49327 2511 aaKnown RBP21.67■■□□□ 1.06
VPS53-210ENST00000571456 CNOT1A5YKK6 2376 aaKnown RBP21.67■■□□□ 1.06
VPS53-210ENST00000571456 OBSL1O75147 1896 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 HHLA1C9JL84 531 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 BEST1O76090 585 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 GFPT2O94808 682 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 ADRB1P08588 477 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 WEE1P30291 646 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 GPD2P43304 727 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 KIF11P52732 1056 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 LMNB2Q03252 620 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 SDHAF4Q5VUM1 108 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 PPP1R2P3Q6NXS1 205 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 ARHGAP18Q8N392 663 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 RSAD2Q8WXG1 361 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 ZSWIM1Q9BR11 485 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 RTKNQ9BST9 563 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 MIS12Q9H081 205 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 PDCL3Q9H2J4 239 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 IL21Q9HBE4 155 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 LRRC4Q9HBW1 653 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 TRPM5Q9NZQ8 1165 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 CDH7Q9ULB5 785 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 SCML2Q9UQR0 700 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 BZW2Q9Y6E2 419 aaKnown RBP21.67■■□□□ 1.06
VPS53-210ENST00000571456 USP3Q9Y6I4 520 aa21.67■■□□□ 1.06
VPS53-210ENST00000571456 DCDC2BA2VCK2 349 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 SART1O43290 800 aaKnown RBP21.66■■□□□ 1.06
VPS53-210ENST00000571456 F11P03951 625 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 SRFP11831 508 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 CDH5P33151 784 aaPredicted RBP21.66■■□□□ 1.06
VPS53-210ENST00000571456 RPL34P49207 117 aaKnown RBP21.66■■□□□ 1.06
VPS53-210ENST00000571456 CDR1P51861 262 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 CDR2Q01850 454 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 SFMBT2Q5VUG0 894 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 SNX30Q5VWJ9 437 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 CCDC186Q7Z3E2 898 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 HS6ST3Q8IZP7 471 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 SLC44A3Q8N4M1 653 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 TMEM35BQ8NCS4 154 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 MSANTD4Q8NCY6 345 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 STKLD1Q8NE28 680 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 GPR152Q8TDT2 470 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 SECISBP2LQ93073 1101 aaKnown RBP21.66■■□□□ 1.06
VPS53-210ENST00000571456 NXPE3Q969Y0 559 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 ATXN3LQ9H3M9 355 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 ZNF334Q9HCZ1 680 aaPredicted RBP21.66■■□□□ 1.06
VPS53-210ENST00000571456 CNGB3Q9NQW8 809 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 EPS15L1Q9UBC2 864 aa21.66■■□□□ 1.06
VPS53-210ENST00000571456 ANAPC1Q9H1A4 1944 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 MYO16Q9Y6X6 1858 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 FBXO21O94952 628 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 PRKCIP41743 596 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 TUBP50607 506 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 GAREM2Q75VX8 874 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 GET4Q7L5D6 327 aaPredicted RBP21.65■■□□□ 1.06
VPS53-210ENST00000571456 MON1AQ86VX9 555 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 SIX6OS1Q8N1H7 587 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 ZNF276Q8N554 614 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 UBA3Q8TBC4 463 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 FGF13Q92913 245 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 FBXO32Q969P5 355 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 E2F7Q96AV8 911 aa21.65■■□□□ 1.06
VPS53-210ENST00000571456 TLR8Q9NR97 1041 aaKnown RBP21.65■■□□□ 1.06
VPS53-210ENST00000571456 NOCTQ9UK39 431 aaKnown RBP21.65■■□□□ 1.06
VPS53-210ENST00000571456 A0A1W2PRU2 124 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 LRRC53A6NM62 1247 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 PNMA6AP0CW24 399 aaPredicted RBP21.64■■□□□ 1.05
VPS53-210ENST00000571456 GBP2P32456 591 aaPredicted RBP21.64■■□□□ 1.05
VPS53-210ENST00000571456 NTHL1P78549 312 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 TAF10Q12962 218 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 ASIC2Q16515 512 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms