RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ARHGAP20Q9P2F6 1191 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 DPP7Q9UHL4 492 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 AGTPBP1Q9UPW5 1226 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 RRP7AQ9Y3A4 280 aaKnown RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 PCDHGA5Q9Y5G8 931 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 PCDHGA1Q9Y5H4 931 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 SPTA1P02549 2419 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 SPEGQ15772 3267 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 COL4A6Q14031 1691 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 TAF1P21675 1872 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 ZSWIM8A7E2V4 1837 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 MYH14Q7Z406 1995 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 KDM3AQ9Y4C1 1321 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 COL5A3P25940 1745 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 KMT2EQ8IZD2 1858 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ARHGAP10A1A4S6 786 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TRIM43BA6NCK2 446 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ZSCAN5CA6NGD5 496 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 NKRFO15226 690 aaKnown RBP eCLIP3.25□□□□□ -1.89
VPS35-209ENST00000568642 TP73O15350 636 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 SYNCRIPO60506 623 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 STAM2O75886 525 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 PIAS2O75928 621 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 OLFM2O95897 454 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 FTLP02792 175 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 ATP5BP06576 529 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 PFKMP08237 780 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CCDC159P0C7I6 412 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ACADMP11310 421 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 COL6A2P12110 1019 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 KRT10P13645 584 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TYRP14679 529 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TPP2P29144 1249 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 EPHA8P29322 1005 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 PBLDP30039 288 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 SLC7A1P30825 629 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ABCD1P33897 745 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 GRK3P35626 688 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 KRT2P35908 639 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 MCAMP43121 646 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 MCM2P49736 904 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 KCNQ1P51787 676 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 SLC26A5P58743 744 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 POLR2FP61218 127 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 RPS16P62249 146 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 ETF1P62495 437 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 MC1RQ01726 317 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 GSTM4Q03013 218 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 GALNT2Q10471 571 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 SSPNQ14714 243 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 SLMAPQ14BN4 828 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 WTAPQ15007 396 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 AOC3Q16853 763 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 AAK1Q2M2I8 961 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 KIZQ2M2Z5 673 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 KBTBD12Q3ZCT8 623 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 METTL24Q5JXM2 366 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TMTC4Q5T4D3 741 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CPZQ66K79 652 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 E4F1Q66K89 784 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 TRIM68Q6AZZ1 485 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 GPR139Q6DWJ6 353 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 KDELC1Q6UW63 502 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 SUSD1Q6UWL2 747 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 PLPPR4Q7Z2D5 763 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 KANSL1Q7Z3B3 1105 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 FAM35AQ86V20 835 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 C1QL4Q86Z23 238 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 FAM217AQ8IXS0 508 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ADSSL1Q8N142 457 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 VPS52Q8N1B4 723 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 NUP93Q8N1F7 819 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TXLNBQ8N3L3 684 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 OXR1Q8N573 874 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TDRD5Q8NAT2 981 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 FANCBQ8NB91 859 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 LINC00116Q8NCU8 138 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 GDAP1Q8TB36 358 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 DCAF11Q8TEB1 546 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ZNF75CPQ92670 426 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 KRT35Q92764 455 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ZKSCAN4Q969J2 545 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 TRIM43Q96BQ3 446 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 SDCCAG3Q96C92 435 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TRIM44Q96DX7 344 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 FAM120BQ96EK7 910 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 RNF125Q96EQ8 232 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 SLC35A4Q96G79 324 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 PDLIM5Q96HC4 596 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 CHAMP1Q96JM3 812 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 CNDP2Q96KP4 475 aaKnown RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 PPP1R13BQ96KQ4 1090 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 PTCHD1Q96NR3 888 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 LENG8Q96PV6 779 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 CRACR2AQ9BSW2 395 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ALG1Q9BT22 464 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 ACE2Q9BYF1 805 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 OSBPL6Q9BZF3 934 aa3.25□□□□□ -1.89
VPS35-209ENST00000568642 TRIM6Q9C030 488 aaPredicted RBP3.25□□□□□ -1.89
VPS35-209ENST00000568642 SENP6Q9GZR1 1112 aaPredicted RBP3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms