RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ACOT1Q86TX2 421 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 TTC30AQ86WT1 665 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 ZMIZ2Q8NF64 920 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 DUSP9Q99956 384 aaKnown RBP15.82■□□□□ 0.12
CLN3-236ENST00000568558 KCTD10Q9H3F6 313 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 ZDHHC4Q9NPG8 344 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 KRT82Q9NSB4 513 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 COMMD8Q9NX08 183 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 GMIPQ9P107 970 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 SH3BP1Q9Y3L3 701 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 HOXC11O43248 304 aaPredicted RBP15.81■□□□□ 0.12
CLN3-236ENST00000568558 AP1G2O75843 785 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 CCDC130P13994 396 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 P2RY2P41231 377 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 TNFRSF4P43489 277 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 DLG4P78352 724 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 GAD2Q05329 585 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 ZACNQ401N2 412 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 KMT5BQ4FZB7 885 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 EOGTQ5NDL2 527 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 EMC10Q5UCC4 262 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 CYP2U1Q7Z449 544 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 BBS7Q8IWZ6 715 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 ETFBKMTQ8IXQ9 262 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 CHAMP1Q96JM3 812 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 SMOQ99835 787 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 POLMQ9NP87 494 aaPredicted RBP15.81■□□□□ 0.12
CLN3-236ENST00000568558 EXOC1Q9NV70 894 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 RCOR1Q9UKL0 485 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 CFAP45Q9UL16 551 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 ZFHX4Q86UP3 3567 aa15.81■□□□□ 0.12
CLN3-236ENST00000568558 ASCC3Q8N3C0 2202 aaKnown RBP15.8■□□□□ 0.12
CLN3-236ENST00000568558 C4orf47A7E2U8 309 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 PATE3B3GLJ2 98 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 PDXKO00764 312 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 KHNYNO15037 678 aaKnown RBP15.8■□□□□ 0.12
CLN3-236ENST00000568558 ADAM23O75077 832 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 BEST1O76090 585 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 P4HA1P13674 534 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 NDST1P52848 882 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 SHC2P98077 582 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 DNM1Q05193 864 aaKnown RBP15.8■□□□□ 0.12
CLN3-236ENST00000568558 ORC1Q13415 861 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 PKP1Q13835 747 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 SGSM1Q2NKQ1 1148 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 CRYBG2Q8N1P7 616 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 SLC2A14Q8TDB8 520 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 WHAMMQ8TF30 809 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 TAF4BQ92750 862 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 WBP2Q969T9 261 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 PAGE5Q96GU1 130 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 CSNK1G1Q9HCP0 422 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 SPHK2Q9NRA0 654 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 HMGXB4Q9UGU5 601 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 CEP295Q9C0D2 2601 aa15.8■□□□□ 0.12
CLN3-236ENST00000568558 TLR5O60602 858 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 TULP3O75386 442 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 ASS1P00966 412 aaKnown RBP15.79■□□□□ 0.12
CLN3-236ENST00000568558 NR3C1P04150 777 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 RPN1P04843 607 aaKnown RBP15.79■□□□□ 0.12
CLN3-236ENST00000568558 HSP90AA1P07900 732 aaKnown RBP15.79■□□□□ 0.12
CLN3-236ENST00000568558 IRF1P10914 325 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 ASPAP45381 313 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 DHPSP49366 369 aaPredicted RBP15.79■□□□□ 0.12
CLN3-236ENST00000568558 PGFP49763 221 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 DAB2IPQ5VWQ8 1189 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 BTBD8Q5XKL5 378 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 SPOPLQ6IQ16 392 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 PSAPL1Q6NUJ1 521 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 SV2AQ7L0J3 742 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 UNC93AQ86WB7 457 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 NAT16Q8N8M0 369 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 TERB1Q8NA31 727 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 SPRYD3Q8NCJ5 442 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 TMC2Q8TDI7 906 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 RLN3Q8WXF3 142 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 SPACA7Q96KW9 195 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 NACA2Q9H009 215 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 FBXO44Q9H4M3 255 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 TMEM9BQ9NQ34 198 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 GON4LQ3T8J9 2241 aa15.79■□□□□ 0.12
CLN3-236ENST00000568558 TCRBV21S2A2A0A5A6 115 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 IKBKBO14920 756 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 NOVA1P51513 510 aaKnown RBP15.78■□□□□ 0.12
CLN3-236ENST00000568558 MAP3K7CLP57077 242 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 MAP7D1Q3KQU3 841 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 PREPLQ4J6C6 727 aaPredicted RBP15.78■□□□□ 0.12
CLN3-236ENST00000568558 C1orf220Q5T0J3 134 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 CEP135Q66GS9 1140 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 LPCAT2Q7L5N7 544 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 TMEM25Q86YD3 366 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 FRMD1Q8N878 549 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 ZNF513Q8N8E2 541 aaPredicted RBP15.78■□□□□ 0.12
CLN3-236ENST00000568558 C12orf29Q8N999 325 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 KCNV2Q8TDN2 545 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 HMGB4Q8WW32 186 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 PIGKQ92643 395 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 TLR8Q9NR97 1041 aaKnown RBP15.78■□□□□ 0.12
CLN3-236ENST00000568558 FAM49BQ9NUQ9 324 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 BCCIPQ9P287 314 aaKnown RBP eCLIP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms